helt (helt,LOC102781250)


Basic Information

Item Value
gene id helt
gene name helt,LOC102781250
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29149523 ~ 29151442 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806572.1
GACCAACTCTTCCCTCAAACCTCAGTCTGCTTCATCTCCTGCCACAACACATCTCTCCTACTTCTAGCTGAACTGATTTTTTAAGAAGTTTGTCAGACACTCGTCGATGGCATCTAAAATGAAAGACAGGAAGAGAACTCCCATCTCCCACAAAGTCATTGAGAAGCGAAGACGGGACCGCATTAATCGCTGCCTTAACGAATTAGGAAAAACTGTACCAATGGCCCTGGCAAAACAGAACTCTGGGAAACTGGAGAAAGCTGAAATCTTGGAAATGACAGTTCAGTACCTGCGAGCGCTCCATTCAGCGGATTTCCCCCGTGGAAGAGAAAAAGGTGAGCTGCTGGCTGAGTTTGCAAACTACTTCCACTACGGATACCACGAGTGTATGAAGAACCTGGTGCATTACCTGACCACAGAGGACAGGGCTGAAACCAAAGACATCAAGTACGCACGGATCCTCGCATTCTTACAGTCTAAATCCCGTGTGGTCACCGAGCCTGTCTTCGGCTCCGTCGCCTCGATGCCAGAACCGTCTGACTACCTCAGCCAGCTGCACTCCTCTCCGGAGCACCAAAGCCACAGTCCGTCTGACTCCGTGTACCAGCAGAGTCCACCGGGACACTTCTCCTGGCACGGCTCGACCCGCAGCCCGGGCATCTCGTACCCAGCAGTGCCGCTCTCTgcgcacacacagcagcacgGTGGATACTTGTCACCGGTTCAGGGACTCGATCatcactatttcaactttatCGGTCACACGCACGCAAACACGTTTAGTTTACACAGTGCGCAACATGCCATGTAAAGAGTTTTgctatgttttgttttaatttatatatttgtgaaTGATGGAAATAGATATTGTACATGTTGTGAATAAATATCTCTG

Function

symbol description
helt Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human HELT (helt bHLH transcription factor).

NR:

description
hairy and enhancer of split-related protein HELT isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806572.1 True 895 mRNA 0.49 4 29149523 29151442

Neighbor

gene id symbol gene type direction distance location
slc25a4 slc25a4 coding downstream 30133 29117120 ~ 29119390 (-)
gucy1a1 gucy1a3 coding downstream 55605 29083928 ~ 29093918 (-)
gucy1b1 gucy1b3 coding downstream 66516 29067272 ~ 29083007 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding downstream 95437 29052260 ~ 29054086 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding downstream 142367 29003269 ~ 29007156 (-)
primpol primpol coding upstream 30619 29182061 ~ 29194904 (-)
tacr3l LOC103361415 coding upstream 47965 29199407 ~ 29206708 (-)
cldnd1b cldnd1,cldnd,LOC103360955 coding upstream 70822 29222264 ~ 29230841 (-)
glb1 glb1,LOC106949603 coding upstream 79986 29231428 ~ 29240352 (-)
fbxo41 fbxo41 coding upstream 231137 29382579 ~ 29437482 (-)
LOC120562689 NA non-coding downstream 47199 29097909 ~ 29102324 (-)
G8486 NA non-coding downstream 132537 29012425 ~ 29016986 (-)
G8438 NA non-coding downstream 233704 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 290452 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 337304 28809425 ~ 28812219 (-)
G8572 NA non-coding upstream 69770 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 90170 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 131390 29282832 ~ 29283044 (-)
G8584 NA non-coding upstream 138858 29290300 ~ 29290813 (-)
G8609 smox non-coding upstream 213024 29364466 ~ 29366481 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1854612 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2570708 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2613787 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 3027874 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 3055279 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 154579 29306021 ~ 29339847 (-)
G8701 NA other upstream 437866 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1424430 30575872 ~ 30744878 (-)
G8975 NA other upstream 1819946 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2783195 31934637 ~ 32006542 (-)

Expression


Co-expression Network