primpol (primpol)


Basic Information

Item Value
gene id primpol
gene name primpol
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29182061 ~ 29194904 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806619.1
GTGCTGTTTCCCGTTCCAGACGCGCCAAAATGTAAACACTTTGAGAAGTGACTGAGTAAACACCAGTTTTTTTCAGATTGAAGGATGACAGGAGGAACAAGGTACAAGTATCCACTCTGCTGAAGTTTCCTTACCCAAGTCACAGAATTTCTACCAGCTCCGTGGGCACGCTGCACTGTAGCTGGCCTCTGACCTTGCTTTGGAGGTGGACATATGATGAACTAGTTGCCCTGTGGGTGCAAGAAAAGGGTCACACATAAGTGGTTGATAAGGAGTTGAAGATGAGGAAGTGGGGAGACCGACTGAATAAGGTAGAGCAGCTTGCTCAGTCGTTCCAGCTGAATCCTCTGGCCGCACACTACAAACCTCGACTGTGGCTGTGCCAGCCTTCCTCGGTATGGAAGCTCTTCCCTCGTCAAAGTATGGCTATCAGCTTCGCTCAGAGCTGCAAAGAGGATGTACATGTTTTTGcacttgaaaaagaaaagacgTCCCTGGGTCAAAGGATCTTCTTGGTTACAAGTTATACTGAGCTGTGGCATTACTACGGGACTTACACACAGTCCTTGATGCACTGCTATGAGGTGATACCAGAGGGCGCTGTTTGTAAGCTTTATTTTGACTTGGAGTTCCACAAGCCCTCAAACAAAGGAACAGATGGGAAAGCTATGGTGTCTTTACTAATCCAGTATGTTTGTGACAAGCTAATGGAAGTTTATGGGATTGAATGCTCCACAAAAAATGTCCTCAATCTTGACTCCAGCACGGAAGAGAAGTTCAGTCGACATCTCATCTTCAATCTCCAAAATGCAGCTTTCAAAGACAACATACATATGGGCAGGTTTATCCATGAAATTCTTCACCCAGTCCTGAGCACACCCAACAGTGGCCTGAATGTTGGGATAAATTCAGTGgcagaaaacagtgaaacacGCGCAACGCATGCTGTTTCTGAGGAGACGCCAGCAAAGGCAGATGAGATGGCTGAAAGTCCACAGGCCAAGAGGCGCAAGCAGGAAGAGAGAGACCTCAGGTTCCTCCAGGTGAAAAACAAGGATGGCCaagtgtgtctctttgttgatCTTGgTGTTTACACCAAGAACAGAAATTTCCGCCTTTACAAGTCATCAAAAGTGGGAAAGAACGCTGCATTCACGTTGGCAGACGACAACAAGTTTATTGACAAACCTGAGAAGGGAATGTCTGCCGAGCAAAGTGTGTTCTTGGCTTCCTTAGTCTGTAATGTGAGTTTCACAGGTCAAAGAATTCTTACGTCAGACTCCCCAGAAACAAAGGAATCCAAAACCCTGAGGCCTGATTGCCAGCAGGGGTCAGCCACAAATCCAGACTTACTTTCTGGCTGCCTGTCGTCCCCTCATAAAGAAGTGGACAACTTTGTATTAACTGTGGTTAAAAAGGATGGCGTACATGGAATGTTTACTTCAACAGGCATCAGACGGTGGAACTACTTTGCCGCTGAACAACTGCTCGTCTACGACATTGCAAAATACCGCTGGTGTGAAAACGTGGAAAGGTTCCATAAAAGCAACAACATCATGATTGTTGTGGACCTCAAAGAGGAACAGTGGTACCAGAAGTGTCATGACCCTGAATGCAGGAACTTTAGGTCCCCAAGTTACCCACTGCCACAGGAGATCTGCGTCAGCTACATCATGACTCTGGATGAGGAAGACCAGGCTTACTTAATGGACGACGCTGGCAACATTGTACCCAGCCAGGCACCAAACCAGGCCCCACAGAGCGCAGTGTGTCCAGAGGAGGAATCAACTGATGTTTGGGGAGACGGACAGGATGATCAGGACTATTTAGAAAGCCTGGACGACTTTGAAAAAAACAGCGGAGATATCTCTGATCAGCTTCTGCTCAAATGTATGGCAGATTTTGACTCCCAGTAGAGGGTAAGAAGTCTGGATCAGGTACCACTATCCCCACCAAACATGCCTGGAAAATACAACATGGATAACATGAAGATCAGTGCCTCACAACTGCACCAAACTAGAAACTGCACTGTTCACTATGATAAGAACCAGTTTCACATGAATTACTAACCTGTAAGCTGTCGCCATGAACAAATATCTGGGCCACTGGATCACTGAGACTATACACGCATTCTATTTTCTCGGGGGCGATGTATTCCCCTTGTGCCAGTTTGAAAATGTGCTTCTTCCTGTCAGTGATCTTCAGAGTGCCGTTctgcaacaaacacaacacacaacttgAAATTAAGGTTGCAACTGATGCTATGCCACTCCACTTGATACATCTATCCATAGGGATGTCCCGACCGGAGTCAATatgggcttttaaaaaaagaaattaatttattttttactgatTGGGGGTTGGCAGACAAAAACGAACTAAGTTAAGTATTAAGCTGAAGACATCTTTTAGTTACTTTGTTTACTTAGctatttttgtaaataaaaaaaataaaaaaaacagtgtgcaGTTTTATTATCTAGGCAAATACAAATATCTGCTCGGGATCTAGCCAAAAAAGctgatcgggacatccctatCTATCCAACGATGAATAGTGCCCTTCAGCATGCCCCGCTTACAGGAAGCCATTTCCCAATGTCTCCTGTGTGCAGCCATCCATCCTGGTCGATTGCCTCTGCAGTTCTCTCAGGATCTTTCAGGTATCCCTTGAATACATTTGGTCCTTTGACACACACCTAGAGGGAGAGATGATAACAttgacaaaaaacacatttctagaAACTGGCACATGTGCAGACAATATCATTTTTATCCATTGTAGAGGGGCGGCTTTAGGGATGGCAATGTAGCTTAGTCAGTTGCTCCACCAATTTAGTCCAGACTGAACTCTCTACAGCTATTGCATGGATTTCCATGACATTttctacagacattcatggtgccAAGAGAACGAATCAGACTTTGGTTATTCTCTGACTTTTCTTCCAGCACCACCAGCAGGtccaatgtttatatttgtccaatactgcagatatttggtcaaaaactAATGCCatttccatcagcctcagctgtccTTTGTGtgtagtgctaattagcaaaagatatcatgctaacatgctaggATGgcgaacatggtaaacattacaccTGCTAGACATCAGCTTGTTGTCATTGTGAGTACGTTAGCGTGCCGACTTTAGCATTTAGACTCTTTAACTTGCTGGAAAATTAActtgtttattgtgtttatcaTGATTTACTttgctttctttttcctctACAGTCAAGTGTGTTTTCTGACCCTCactacactgtaataaattgtaataatcata
>XM_039806629.1
ACTGGATTAGCTAAAGTTTTACCATAGAATCGTACCTAATGTTTTTTTCAGATTGAAGGATGACAGGAGGAACAAGGTACAAGTATCCACTCTGCTGAAGTTTCCTTACCCAAGTCACAGAATTTCTACCAGCTCCGTGGGCACGCTGCACTGTAGCTGGCCTCTGACCTTGCTTTGGAGGTGGACATATGATGAACTAGTTGCCCTGTGGGTGCAAGAAAAGGGTCACACATAAGTGGTTGATAAGGAGTTGAAGATGAGGAAGTGGGGAGACCGACTGAATAAGGTAGAGCAGCTTGCTCAGTCGTTCCAGCTGAATCCTCTGGCCGCACACTACAAACCTCGACTGTGGCTGTGCCAGCCTTCCTCGGTATGGAAGCTCTTCCCTCGTCAAAGTATGGCTATCAGCTTCGCTCAGAGCTGCAAAGAGGATGTACATGTTTTTGcacttgaaaaagaaaagacgTCCCTGGGTCAAAGGATCTTCTTGGTTACAAGTTATACTGAGCTGTGGCATTACTACGGGACTTACACACAGTCCTTGATGCACTGCTATGAGGTGATACCAGAGGGCGCTGTTTGTAAGCTTTATTTTGACTTGGAGTTCCACAAGCCCTCAAACAAAGGAACAGATGGGAAAGCTATGGTGTCTTTACTAATCCAGTATGTTTGTGACAAGCTAATGGAAGTTTATGGGATTGAATGCTCCACAAAAAATGTCCTCAATCTTGACTCCAGCACGGAAGAGAAGTTCAGTCGACATCTCATCTTCAATCTCCAAAATGCAGCTTTCAAAGACAACATACATATGGGCAGGTTTATCCATGAAATTCTTCACCCAGTCCTGAGCACACCCAACAGTGGCCTGAATGTTGGGATAAATTCAGTGgcagaaaacagtgaaacacGCGCAACGCATGCTGTTTCTGAGGAGACGCCAGCAAAGGCAGATGAGATGGCTGAAAGTCCACAGGCCAAGAGGCGCAAGCAGGAAGAGAGAGACCTCAGGTTCCTCCAGGTGAAAAACAAGGATGGCCaagtgtgtctctttgttgatCTTGgTGTTTACACCAAGAACAGAAATTTCCGCCTTTACAAGTCATCAAAAGTGGGAAAGAACGCTGCATTCACGTTGGCAGACGACAACAAGTTTATTGACAAACCTGAGAAGGGAATGTCTGCCGAGCAAAGTGTGTTCTTGGCTTCCTTAGTCTGTAATGTGAGTTTCACAGGTCAAAGAATTCTTACGTCAGACTCCCCAGAAACAAAGGAATCCAAAACCCTGAGGCCTGATTGCCAGCAGGGGTCAGCCACAAATCCAGACTTACTTTCTGGCTGCCTGTCGTCCCCTCATAAAGAAGTGGACAACTTTGTATTAACTGTGGTTAAAAAGGATGGCGTACATGGAATGTTTACTTCAACAGGCATCAGACGGTGGAACTACTTTGCCGCTGAACAACTGCTCGTCTACGACATTGCAAAATACCGCTGGTGTGAAAACGTGGAAAGGTTCCATAAAAGCAACAACATCATGATTGTTGTGGACCTCAAAGAGGAACAGTGGTACCAGAAGTGTCATGACCCTGAATGCAGGAACTTTAGGTCCCCAAGTTACCCACTGCCACAGGAGATCTGCGTCAGCTACATCATGACTCTGGATGAGGAAGACCAGGCTTACTTAATGGACGACGCTGGCAACATTGTACCCAGCCAGGCACCAAACCAGGCCCCACAGAGCGCAGTGTGTCCAGAGGAGGAATCAACTGATGTTTGGGGAGACGGACAGGATGATCAGGACTATTTAGAAAGCCTGGACGACTTTGAAAAAAACAGCGGAGATATCTCTGATCAGCTTCTGCTCAAATGTATGGCAGATTTTGACTCCCAGTAGAGGGTAAGAAGTCTGGATCAGGTACCACTATCCCCACCAAACATGCCTGGAAAATACAACATGGATAACATGAAGATCAGTGCCTCACAACTGCACCAAACTAGAAACTGCACTGTTCACTATGATAAGAACCAGTTTCACATGAATTACTAACCTGTAAGCTGTCGCCATGAACAAATATCTGGGCCACTGGATCACTGAGACTATACACGCATTCTATTTTCTCGGGGGCGATGTATTCCCCTTGTGCCAGTTTGAAAATGTGCTTCTTCCTGTCAGTGATCTTCAGAGTGCCGTTctgcaacaaacacaacacacaacttgAAATTAAGGTTGCAACTGATGCTATGCCACTCCACTTGATACATCTATCCATAGGGATGTCCCGACCGGAGTCAATatgggcttttaaaaaaagaaattaatttattttttactgatTGGGGGTTGGCAGACAAAAACGAACTAAGTTAAGTATTAAGCTGAAGACATCTTTTAGTTACTTTGTTTACTTAGctatttttgtaaataaaaaaaataaaaaaaacagtgtgcaGTTTTATTATCTAGGCAAATACAAATATCTGCTCGGGATCTAGCCAAAAAAGctgatcgggacatccctatCTATCCAACGATGAATAGTGCCCTTCAGCATGCCCCGCTTACAGGAAGCCATTTCCCAATGTCTCCTGTGTGCAGCCATCCATCCTGGTCGATTGCCTCTGCAGTTCTCTCAGGATCTTTCAGGTATCCCTTGAATACATTTGGTCCTTTGACACACACCTAGAGGGAGAGATGATAACAttgacaaaaaacacatttctagaAACTGGCACATGTGCAGACAATATCATTTTTATCCATTGTAGAGGGGCGGCTTTAGGGATGGCAATGTAGCTTAGTCAGTTGCTCCACCAATTTAGTCCAGACTGAACTCTCTACAGCTATTGCATGGATTTCCATGACATTttctacagacattcatggtgccAAGAGAACGAATCAGACTTTGGTTATTCTCTGACTTTTCTTCCAGCACCACCAGCAGGtccaatgtttatatttgtccaatactgcagatatttggtcaaaaactAATGCCatttccatcagcctcagctgtccTTTGTGtgtagtgctaattagcaaaagatatcatgctaacatgctaggATGgcgaacatggtaaacattacaccTGCTAGACATCAGCTTGTTGTCATTGTGAGTACGTTAGCGTGCCGACTTTAGCATTTAGACTCTTTAACTTGCTGGAAAATTAActtgtttattgtgtttatcaTGATTTACTttgctttctttttcctctACAGTCAAGTGTGTTTTCTGACCCTCactacactgtaataaattgtaataatcata
>XM_039806638.1
GTGCTGTTTCCCGTTCCAGACGCGCCAAAATGTAAACACTTTGAGAAGTGACTGAGTAAACACCAGTTTTTTTCAGATTGAAGGATGACAGGAGGAACAAGGTACAAGTATCCACTCTGCTGAAGTTTCCTTACCCAAGTCACAGAATTTCTACCAGCTCCGTGGGCACGCTGCACTGTAGCTGGCCTCTGACCTTGCTTTGGAGGTGGACATATGATGAACTAGTTGCCCTGTGGGTGCAAGAAAAGGGTCACACATAAGTGGTTGATAAGGAGTTGAAGATGAGGAAGTGGGGAGACCGACTGAATAAGGTAGAGCAGCTTGCTCAGTCGTTCCAGCTGAATCCTCTGGCCGCACACTACAAACCTCGACTGTGGCTGTGCCAGCCTTCCTCGGTATGGAAGCTCTTCCCTCGTCAAAGTATGGCTATCAGCTTCGCTCAGAGCTGCAAAGAGGATGTACATGTTTTTGcacttgaaaaagaaaagacgTCCCTGGGTCAAAGGATCTTCTTGGTTACAAGTTATACTGAGCTGTGGCATTACTACGGGACTTACACACAGTCCTTGATGCACTGCTATGAGGTGATACCAGAGGGCGCTGTTTGTAAGCTTTATTTTGACTTGGAGTTCCACAAGCCCTCAAACAAAGGAACAGATGGGAAAGCTATGGTGTCTTTACTAATCCAGTATGTTTGTGACAAGCTAATGGAAGTTTATGGGATTGAATGCTCCACAAAAAATGTCCTCAATCTTGACTCCAGCACGGAAGAGAAGTTCAGTCGACATCTCATCTTCAATCTCCAAAATGCAGCTTTCAAAGACAACATACATATGGGCAGGTTTATCCATGAAATTCTTCACCCAGTCCTGAGCACACCCAACAGTGGCCTGAATGTTGGGATAAATTCAGTGgcagaaaacagtgaaacacGCGCAACGCATGCTGTTTCTGAGGAGACGCCAGCAAAGGCAGATGAGATGGCTGAAAGTCCACAGGCCAAGAGGCGCAAGCAGGAAGAGAGAGACCTCAGGTTCCTCCAGGTGAAAAACAAGGATGGCCaagtgtgtctctttgttgatCTTGgTGTTTACACCAAGAACAGAAATTTCCGCCTTTACAAGTCATCAAAAGTGGGAAAGAACGCTGCATTCACGTTGGCAGACGACAACAAGTTTATTGACAAACCTGAGAAGGGAATGTCTGCCGAGCAAAGTGTGTTCTTGGCTTCCTTAGTCTGTAATGTGAGTTTCACAGGTCAAAGAATTCTTACGTCAGACTCCCCAGAAACAAAGGAATCCAAAACCCTGAGGCCTGATTGCCAGCAGGGGTCAGCCACAAATCCAGACTTACTTTCTGGCTGCCTGTCGTCCCCTCATAAAGAAGTGGACAACTTTGTATTAACTGTGGTTAAAAAGGATGGCGTACATGGAAGCATCAGACGGTGGAACTACTTTGCCGCTGAACAACTGCTCGTCTACGACATTGCAAAATACCGCTGGTGTGAAAACGTGGAAAGGTTCCATAAAAGCAACAACATCATGATTGTTGTGGACCTCAAAGAGGAACAGTGGTACCAGAAGTGTCATGACCCTGAATGCAGGAACTTTAGGTCCCCAAGTTACCCACTGCCACAGGAGATCTGCGTCAGCTACATCATGACTCTGGATGAGGAAGACCAGGCTTACTTAATGGACGACGCTGGCAACATTGTACCCAGCCAGGCACCAAACCAGGCCCCACAGAGCGCAGTGTGTCCAGAGGAGGAATCAACTGATGTTTGGGGAGACGGACAGGATGATCAGGACTATTTAGAAAGCCTGGACGACTTTGAAAAAAACAGCGGAGATATCTCTGATCAGCTTCTGCTCAAATGTATGGCAGATTTTGACTCCCAGTAGAGGGTAAGAAGTCTGGATCAGGTACCACTATCCCCACCAAACATGCCTGGAAAATACAACATGGATAACATGAAGATCAGTGCCTCACAACTGCACCAAACTAGAAACTGCACTGTTCACTATGATAAGAACCAGTTTCACATGAATTACTAACCTGTAAGCTGTCGCCATGAACAAATATCTGGGCCACTGGATCACTGAGACTATACACGCATTCTATTTTCTCGGGGGCGATGTATTCCCCTTGTGCCAGTTTGAAAATGTGCTTCTTCCTGTCAGTGATCTTCAGAGTGCCGTTctgcaacaaacacaacacacaacttgAAATTAAGGTTGCAACTGATGCTATGCCACTCCACTTGATACATCTATCCATAGGGATGTCCCGACCGGAGTCAATatgggcttttaaaaaaagaaattaatttattttttactgatTGGGGGTTGGCAGACAAAAACGAACTAAGTTAAGTATTAAGCTGAAGACATCTTTTAGTTACTTTGTTTACTTAGctatttttgtaaataaaaaaaataaaaaaaacagtgtgcaGTTTTATTATCTAGGCAAATACAAATATCTGCTCGGGATCTAGCCAAAAAAGctgatcgggacatccctatCTATCCAACGATGAATAGTGCCCTTCAGCATGCCCCGCTTACAGGAAGCCATTTCCCAATGTCTCCTGTGTGCAGCCATCCATCCTGGTCGATTGCCTCTGCAGTTCTCTCAGGATCTTTCAGGTATCCCTTGAATACATTTGGTCCTTTGACACACACCTAGAGGGAGAGATGATAACAttgacaaaaaacacatttctagaAACTGGCACATGTGCAGACAATATCATTTTTATCCATTGTAGAGGGGCGGCTTTAGGGATGGCAATGTAGCTTAGTCAGTTGCTCCACCAATTTAGTCCAGACTGAACTCTCTACAGCTATTGCATGGATTTCCATGACATTttctacagacattcatggtgccAAGAGAACGAATCAGACTTTGGTTATTCTCTGACTTTTCTTCCAGCACCACCAGCAGGtccaatgtttatatttgtccaatactgcagatatttggtcaaaaactAATGCCatttccatcagcctcagctgtccTTTGTGtgtagtgctaattagcaaaagatatcatgctaacatgctaggATGgcgaacatggtaaacattacaccTGCTAGACATCAGCTTGTTGTCATTGTGAGTACGTTAGCGTGCCGACTTTAGCATTTAGACTCTTTAACTTGCTGGAAAATTAActtgtttattgtgtttatcaTGATTTACTttgctttctttttcctctACAGTCAAGTGTGTTTTCTGACCCTCactacactgtaataaattgtaataatcata

Function

symbol description
primpol Predicted to enable chromatin binding activity; nucleotidyltransferase activity; and transition metal ion binding activity. Predicted to be involved in DNA metabolic process; mitochondrial DNA replication; and response to UV. Predicted to act upstream of or within DNA repair. Predicted to be located in replication fork. Predicted to be active in mitochondrial matrix and nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human PRIMPOL (primase and DNA directed polymerase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K22761 PRIMPOL; DNA-directed primase/polymerase protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806619.1 True 3305 mRNA 0.44 15 29182061 29194904
XM_039806629.1 False 3280 mRNA 0.44 15 29182061 29194813
XM_039806638.1 False 3290 mRNA 0.44 15 29182061 29194904

Neighbor

gene id symbol gene type direction distance location
helt helt,LOC102781250 coding downstream 30619 29149523 ~ 29151442 (-)
slc25a4 slc25a4 coding downstream 62671 29117120 ~ 29119390 (-)
gucy1a1 gucy1a3 coding downstream 88143 29083928 ~ 29093918 (-)
gucy1b1 gucy1b3 coding downstream 99054 29067272 ~ 29083007 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding downstream 127975 29052260 ~ 29054086 (-)
tacr3l LOC103361415 coding upstream 4503 29199407 ~ 29206708 (-)
cldnd1b cldnd1,cldnd,LOC103360955 coding upstream 27360 29222264 ~ 29230841 (-)
glb1 glb1,LOC106949603 coding upstream 36524 29231428 ~ 29240352 (-)
fbxo41 fbxo41 coding upstream 187675 29382579 ~ 29437482 (-)
LOC120572938 LOC103361029,LOC102212686,LOC102777346,LOC100696909 coding upstream 259406 29454310 ~ 29458103 (-)
LOC120562689 NA non-coding downstream 79737 29097909 ~ 29102324 (-)
G8486 NA non-coding downstream 165075 29012425 ~ 29016986 (-)
G8438 NA non-coding downstream 266242 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 322990 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 369842 28809425 ~ 28812219 (-)
G8572 NA non-coding upstream 26308 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 46708 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 87928 29282832 ~ 29283044 (-)
G8584 NA non-coding upstream 95396 29290300 ~ 29290813 (-)
G8609 smox non-coding upstream 169562 29364466 ~ 29366481 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1887150 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2603246 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2646325 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 3060412 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 3087817 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 111117 29306021 ~ 29339847 (-)
G8701 NA other upstream 394404 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1380968 30575872 ~ 30744878 (-)
G8975 NA other upstream 1776484 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2739733 31934637 ~ 32006542 (-)

Expression


Co-expression Network