LOC120562921 (LOC104952754,LOC103372004)


Basic Information

Item Value
gene id LOC120562921
gene name LOC104952754,LOC103372004
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18783925 ~ 18787858 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806907.1
TTTGTTCACAGGGGAGACAGTGGGACTGTTCTCTGTTCATCATGGATTTCTCACCTGGGGTTCTGATCCTGTGTTCTCTGTTGTGTTCAGTGATCTCTTTCTGTGCAGTGGCTGGTCAGGCTCCTGTCGTCTCAGTGGAGCCCCGGACTGCTACTGTGCGCCAAGGGGAGTCTGCCAGCTTTAGATGCCAGGTGGCAAGAGGTGCACAGCCAATCCAACTGGAGTGGAAGAGAGCCAATAACCAAGCATTACCAGCCAATGCTAAGACTGGTCCTGATGGCTCTGTGCTGACGGTTGCCAACGCCCGACCTGAAAACCAGGGCCAGTACCGCTGCGTGGCAGCCAACTCTGCAGGCCGCAGCACTGTCGCGGCTGCGCTGAACGTCAAACATGCTCCTAAAGTACACCTGACACCAGCCGGGCCCCTGCGGGTCAGGATGGGTTCCCCTGTGTCAGTGGAGTGTCGTGCCACAGGCAGGCCACGCCCCACGTTGACCTGGAAACGCCAAGGCTCCACCCTGCAGCTGGTTACCAAGGAGACAAATGATGTCAACACAATACAGTGGCCTGTAGTGCATCCAGAGGACTCAGGAGTTTATATTTGCCAGGCTGAAAACAATGAGGGGGTGACAGAAGTCAAAGTTGAGGTTATTGTTGAGGGGCAGCCGGGAGCACCGGTGGCTTCAGTGGGCGCTGCAGAAATGACAGTGGTGGAGGGACGTACAGTCACAATGGAGTGTCAGGCCAGTGGTTCCCCTCTTCCTGTCATCACCTGGTCCAAGCTGCGAGCACCATTGCCATGGAAACACACAGTGGTCGGTGGAGTTTTGACACTGACCAGTGTGGGGCGCCAAGATTCAGGACAATACATCTGTAACGCTACCAACATTCATGGCTACAGTGAAGCATACACGCAAATGGAGGTGGAGAGTCCCCCGTACGCCACCTGCCtgcccgaccaggttaggctcCAGCCCGGAGATGCCCTGCGCCTGCAGTGCCTTGCCCACGGCACTCATCCCATTCACTTTGAATGGAGCCGGGGGGGCAGGGTGAGCCTGCCTCCAGGAGCAGAGACCACAAGGGATGGAAAGCTGCTGATAGCCCACGTTAAACTGAGCGACAGCGGAACGTACAAATGTGTGGCCTCCAACCAAATCGGCAACAGTGAGGCACTGGCCAAAGTCATCATAAAAGcttaaTCCATTGTGGCCATACTGTGTCTGATTGACAAACCATCTATGCAGCGCTTACAACTTCTTCAAGCCAGATGGCTAATACTGAGAAAACAgagcaaattatatttaatagaTTCTTAAATTCTGACTTTGAAAGTGAAAGATATCAATGCTGTTTGAACTTTAGATTtttttgcacatactgtatggggTTAACTTTGTACTTTTATAGAAAACTGATACTGTTGCCATTGTTGCTCCTGTCTCATATTGCCTGTTGAAAAGCTTTTCCCTGGAGCTCAGTGTGGACTGACGtcctacagtatgtgtgtttgttctgcTGGAATGCCTCTGCACCCTGTCTGCCTCCCTTCCTGTCATCTGCTCAGTCCACACTGTTGCACTTCCAAAATTGAAAGGAggacacaaaacaaagaaaaaaatgttcaaatatAAAACCCCTCATTATGCCAATAAATATcagaacaataaaaacaaaataaaaacaatttcacTGAAA
>XM_039806989.1
TAGGGGTTAAAGGTTGAAAGTGATTGTATGAAAAAGAGACAGACCCTGTGAAAGAGAGTTTGTTCACAGGGGAGACAGTGGGACTGTTCTCTGTTCATCATGGATTTCTCACCTGGGGTTCTGATCCTGTGTTCTCTGTTGTGTTCAGTGGCTGGTCAGGCTCCTGTCGTCTCAGTGGAGCCCCGGACTGCTACTGTGCGCCAAGGGGAGTCTGCCAGCTTTAGATGCCAGGTGGCAAGAGGTGCACAGCCAATCCAACTGGAGTGGAAGAGAGCCAATAACCAAGCATTACCAGCCAATGCTAAGACTGGTCCTGATGGCTCTGTGCTGACGGTTGCCAACGCCCGACCTGAAAACCAGGGCCAGTACCGCTGCGTGGCAGCCAACTCTGCAGGCCGCAGCACTGTCGCGGCTGCGCTGAACGTCAAACATGCTCCTAAAGTACACCTGACACCAGCCGGGCCCCTGCGGGTCAGGATGGGTTCCCCTGTGTCAGTGGAGTGTCGTGCCACAGGCAGGCCACGCCCCACGTTGACCTGGAAACGCCAAGGCTCCACCCTGCAGCTGGTTACCAAGGAGACAAATGATGTCAACACAATACAGTGGCCTGTAGTGCATCCAGAGGACTCAGGAGTTTATATTTGCCAGGCTGAAAACAATGAGGGGGTGACAGAAGTCAAAGTTGAGGTTATTGTTGAGGGGCAGCCGGGAGCACCGGTGGCTTCAGTGGGCGCTGCAGAAATGACAGTGGTGGAGGGACGTACAGTCACAATGGAGTGTCAGGCCAGTGGTTCCCCTCTTCCTGTCATCACCTGGTCCAAGCTGCGAGCACCATTGCCATGGAAACACACAGTGGTCGGTGGAGTTTTGACACTGACCAGTGTGGGGCGCCAAGATTCAGGACAATACATCTGTAACGCTACCAACATTCATGGCTACAGTGAAGCATACACGCAAATGGAGGTGGAGAGTCCCCCGTACGCCACCTGCCtgcccgaccaggttaggctcCAGCCCGGAGATGCCCTGCGCCTGCAGTGCCTTGCCCACGGCACTCATCCCATTCACTTTGAATGGAGCCGGGGGGGCAGGGTGAGCCTGCCTCCAGGAGCAGAGACCACAAGGGATGGAAAGCTGCTGATAGCCCACGTTAAACTGAGCGACAGCGGAACGTACAAATGTGTGGCCTCCAACCAAATCGGCAACAGTGAGGCACTGGCCAAAGTCATCATAAAAGcttaaTCCATTGTGGCCATACTGTGTCTGATTGACAAACCATCTATGCAGCGCTTACAACTTCTTCAAGCCAGATGGCTAATACTGAGAAAACAgagcaaattatatttaatagaTTCTTAAATTCTGACTTTGAAAGTGAAAGATATCAATGCTGTTTGAACTTTAGATTtttttgcacatactgtatggggTTAACTTTGTACTTTTATAGAAAACTGATACTGTTGCCATTGTTGCTCCTGTCTCATATTGCCTGTTGAAAAGCTTTTCCCTGGAGCTCAGTGTGGACTGACGtcctacagtatgtgtgtttgttctgcTGGAATGCCTCTGCACCCTGTCTGCCTCCCTTCCTGTCATCTGCTCAGTCCACACTGTTGCACTTCCAAAATTGAAAGGAggacacaaaacaaagaaaaaaatgttcaaatatAAAACCCCTCATTATGCCAATAAATATcagaacaataaaaacaaaataaaaacaatttcacTGAAA

Function

NR:

description
PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806907.1 False 1698 mRNA 0.51 8 18783925 18787800
XM_039806989.1 True 1738 mRNA 0.50 8 18783925 18787858

Neighbor

gene id symbol gene type direction distance location
LOC120559658 LOC104952753 coding downstream 17041 18752659 ~ 18766884 (-)
LOC120559642 slc27a1,LOC103362239 coding downstream 31934 18743569 ~ 18751991 (-)
LOC120563090 NA coding downstream 47404 18727400 ~ 18736521 (-)
LOC120563085 colgalt1,LOC102311502,LOC100712117,LOC103362237 coding downstream 57175 18712936 ~ 18726750 (-)
LOC120567388 LOC100712387,LOC102193985,LOC102310568,LOC101487876 coding downstream 73205 18705404 ~ 18710720 (-)
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding upstream 2758 18790616 ~ 18804634 (-)
gde1 gde1,LOC100700294,LOC102797450 coding upstream 197245 18985103 ~ 18990486 (-)
xpnpep1 xpnpep1 coding upstream 317389 19105247 ~ 19120656 (-)
cusr NA coding upstream 333175 19121033 ~ 19142663 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 816571 19604429 ~ 19639873 (-)
G5894 NA non-coding downstream 94880 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding downstream 119418 18663944 ~ 18664507 (-)
G5809 NA non-coding downstream 196389 18584673 ~ 18587536 (-)
G5801 NA non-coding downstream 208594 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 209671 18574050 ~ 18574254 (-)
G5921 LOC103372008 non-coding upstream 48419 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 87017 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 142398 18930256 ~ 18930500 (-)
G5954 NA non-coding upstream 168549 18956407 ~ 18956631 (-)
G5970 NA non-coding upstream 173354 18961212 ~ 18961997 (-)
LOC120556582 NA other downstream 902166 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 935888 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 948164 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 1070027 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1362827 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 97110 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 184112 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 235358 19023216 ~ 19037081 (-)
G6084 NA other upstream 701730 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 977035 19764893 ~ 19765387 (-)

Expression


Co-expression Network