LOC120563200 (LOC103374761)


Basic Information

Item Value
gene id LOC120563200
gene name LOC103374761
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5037606 ~ 5066190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807374.1
CAGTCCAGTCTCTCTGCAGGTCAAGAAAGatggcggcggcggcggcggcggtggAGAGCGGGCTCAAGCAGCGGAATCATAAAAACAGCTTCTTCACACAAGgcgGCAGCGACCGGTTTAACTCCCCGATGAGGtgcgaggaggaagaggacgagctgctggaggaagaggaggaggaggaagaggccaGTGCTCCGCGGCCGGTGCAGATCGTGTCGGCGGATGAGGAGGAGCACTCGTTCTCGCTGCAGGAGGAGGCGCTggagcggctgctgctgcaggacgCCGTGCAGGACCTCCACGTGGTCGTGGTCTCCGTGGCCGGAGCTTTCCGCAAGGGCAAGTCCTTCCTGCTGGACTTCATGCTGCGCTACATGCACAGACAGTCGGGTTCGTGGGTCGGCAGCGACGACGAGCCCCTGACGGGCTTCAGCTGGCGAGGAGGCTGCGAGAGGGAGACCACGGGCATCCTGGCCTGGAGCGAGGTGTTCGTGGTGGAGAAACCAGACGGCTGCAAGGTCAGTTCACGGGCCGACGCCCCGGTCGGCATCTTCTCGCCGCTTgtgtACAACCTCTCCCAAAATGTCCAGGAAGACGACCTGCAGCATCTCCAGCTCTTCACCGAGTACGGACGGCTGGCCATGGAGGAGGTCTACGAAAAACCTTTTCAGTCTCTGATGTTCCTGATCAGAGACTGGAGCTACCCCTACGAGCATCCGTACGGTCTGACGGGAGGACAGAGCTTCCTGGAGAAGAGACTGCAGgtcaaGCAGAACCAACACGAGGAGCTGCAGAACGTCAGGAAACACATCCACTCGTGCTTCTCCAACATCGGCTGCTTCCTCCTGCCTCACCCGGGCCTCAGGGTGGCCACCAACCCGCACTTCGACGGACGCCTCAGCGATATCGACGAGGAGTTCAAGGCGGAGCTGGTGAACCTCGTCCCGACGCTGCTCGCTCCGGAGAACCTGGTGGAGAAAGAGATCGGAGGAGTGAAGATCACCTGCAGAGACCTACTGCACTACTTCAAAGCTTACATGAAGATCTACCAGGGAGAGGAGCTTCCTCACCCCAAGTCCATGCtgcagGCAACAGCTGAAGCTAATAACCTGGCCGCTGTAGCAGGAGCCAAAGACTTGTACAACAAGAGCATGGAGCAGGTCTGCGGCGGGGACCAGCCCTACGTTTCCCCGACTGAGCTGGAGCGGCGCCACGCCGAGCAGCGCCAGGCCTCGGTGAGACACTTCCGCTCGGTGAAGAAGATGGGCGGCGAGGACTTCTGCCGGCGCTACCAGGAGCAGCTGGAGGCGGAGCTGGACGAGGCCTACGCCAACTTCAGCAAGCACAACGACGGCAAGAACATCTTCTTCGCCGCGCGGACGCCGGCCACGCTGTTCGCCGTCATGTTCGCCATGTACGTGGCGTCGCTGGTCACGGGCTTCGTGGGCATCGGCTCCGTGGCCGCGCTGTGTAACCTGGTGATGGGCGCCGCGCTGACTGCGCTCTGCGTCTGGGCGTACGCCAAGTACTCGGGCGAGTACCGCGAGGTGGGAGCGGTCATCGACCAGGTGGCTGAAACTCTCTGGGAGCAGAGGACTCCACGAAAGgtTTTCTCCAAGCTCTTCGAAGTGGCTCGGAGTCGAGTCCCGTTGGGGAGCCTGATCCCGGCGCCGCGGCCCCGGCTCGCCTCGAACAACAACGTCAAGAAGAAAAACTAGCAGCACGCCACCTTGTTTTCCCAAGGCGTTTGATCTTTCCTCTCCTTTCACTCTCTGCTCAGTtttgaaaaacaatttttttttaagactgtTTGAGATGTGTAAATTTGAGTTTTTGTTCTCTGACTGTAGACGAAGGTTCCTCGCCGTGCCGGCTGTAGACCCGGACGAAGCAGTGTGATGTATTTTAGTATTTGTCAGTGGGCGGGGTTTAGGTATTTATTGGTGGGAGGGGCCATTATTCTATCACCGAGAGTCGTCCCGGGTGAGTGTTTGCCCGTTGGACGACTCAGCATTAATGATTCCTATTTATGTGAACGTATGAATGAAGAGCATGACCTCCTCACGGTCCCCTTCCTGTCCCAACGTCTCCGTCAGGTCGGTCTCTGTCGCTGGGCGGCGTCCCAACCAAAGTTTTCAGCTTTACTCTTAGAGGCTCTCAGACTGGCGGGCTGACACAGCGCATTCAGGACTTCATCAACAAGTCGGTTTCTGGgacattttttacagtttttcttacTTACTCTGAATCACAAACTCATGGATGTTTCTACGGTTCTGTGCGTTTGAACGACGATTCCTACGGTTTAGCTTAAAATGGTCAGTTTGGGTTTTTACTTCTCGGTAGTCGGTGTGTTACTGGTCTCACGTTGCCACAGCGCTAGCGTTGGGaattgtttggattttaacgattatCGTTTCCAAAGAACATTCATTGCTTCTGGGAGAAAACCTACCGCTGGGTTGAGAAttatgtgtgactgtgtgtagaGAGAGTGGACAGCGTTCGGACACAGACTTGTGTTCTCGCAACTCTTCATCTTCCTTCTTctgactagggatgcaccgaatccagatttttggggttgggCTGAATCCTGAGAATCCTGGTAgagattgtgctgactcctcctcccatcctcagtcaatgaacccagtaaacacatgaatgaagtaaacagggactgtccttcctttgccgtacctgaagttgct

Function

NR:

description
PREDICTED: atlastin-2-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807374.1 True 2714 mRNA 0.56 13 5037606 5066190

Neighbor

gene id symbol gene type direction distance location
LOC120563519 LOC103374759 coding downstream 187032 4827103 ~ 4850574 (-)
LOC120563156 NA coding downstream 244563 4785365 ~ 4793043 (-)
LOC120563484 NA coding downstream 276149 4695160 ~ 4761457 (-)
LOC120563637 NA coding downstream 330097 4702039 ~ 4707509 (-)
LOC120563510 NA coding downstream 346934 4671581 ~ 4690672 (-)
LOC120563650 NA coding upstream 177725 5243915 ~ 5275696 (-)
LOC120563624 NA coding upstream 335371 5401561 ~ 5407181 (-)
LOC120563585 NA coding upstream 403873 5470063 ~ 5471326 (-)
LOC120563643 NA coding upstream 405256 5471446 ~ 5472005 (-)
kif16ba kif16b coding upstream 747175 5813365 ~ 5874875 (-)
G1705 NA non-coding downstream 1081 5034505 ~ 5036525 (-)
G1664 NA non-coding downstream 211424 4821726 ~ 4826182 (-)
G1675 NA non-coding downstream 221960 4807904 ~ 4815646 (-)
G1666 LOC103369328 non-coding downstream 235636 4799876 ~ 4801970 (-)
G1622 NA non-coding downstream 246236 4734914 ~ 4791370 (-)
G1723 NA non-coding upstream 9778 5075968 ~ 5096624 (-)
LOC120563682 NA non-coding upstream 134017 5200207 ~ 5200828 (-)
G1994 NA non-coding upstream 193800 5259990 ~ 5327757 (-)
G2009 NA non-coding upstream 253877 5320067 ~ 5346322 (-)
G2022 NA non-coding upstream 274344 5340534 ~ 5341507 (-)
G1623 NA other downstream 249029 4641586 ~ 4788577 (-)
LOC120563598 NA other downstream 253690 4774817 ~ 4783916 (-)
G1464 NA other downstream 691520 4345547 ~ 4346086 (-)
G1242 NA other downstream 1365068 3648688 ~ 3672538 (-)
dpy30 NA other downstream 1373217 3659840 ~ 3664389 (-)
G1722 hnrnpll,LOC108249392,LOC104956991,LOC106530872,LOC103368822 other upstream 10416 5076606 ~ 5085518 (-)
G1726 NA other upstream 31179 5097369 ~ 5097634 (-)
LOC120564103 NA other upstream 47830 5114020 ~ 5135305 (-)
LOC120563591 LOC107656489 other upstream 82326 5148516 ~ 5150419 (-)
G2010 NA other upstream 165307 5231497 ~ 5353152 (-)

Expression


Co-expression Network