tecrb (tecr,LOC107390378)


Basic Information

Item Value
gene id tecrb
gene name tecr,LOC107390378
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18539663 ~ 18552834 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807378.1
GGGGGAGAGACTGATTTATTTCCACAGCTGAGAGCTCCTCTATGGTTTGTCGTAGATTTTCGGACAGACAGTTGAGAGGTGAAGAGTAACAAGAGAGCCGAAAAGAGTGAGggaaagaaggggaaaaaataCTGAGTGCAGGAGGAGGACTGTGGACATGGATGCCCTAGCACTAGAGGCCACCAGCACTAAAAAGCCATCTAACGGGGCGGCAGCGGTGGCTGCCCCGCTACCGGCTCAAGCTCCGGTCAAGCGCAAAGCtgctaaaaaaactaaaaaggctgttgttttctttgagGTGGAGATACTGGATGCCAAGACCAAGGACAAGCTCTGCTTCCTGGACAAGGTCGAGCCAAATGCCACTATCGGAGAGATCAAGTCTATGTTCCACAAGAGCCATCCTCAGTGGTACCCAGCCAGGCAGTCCATTCGCCTCGACCCCAAGGGGAAGTCTCTGAAGGATGAGGATGTTCTGCAGCATCTCCCTGTGGGAACCACAGCAACCTTCTACTTCAGAGACCTGGGAGCCCAGATCAGCTGGGTCACAGTCTTTCTGACGGAGTACACCGGTCCTCTGGTCCTCTATCTGATGTTCTACTTCAGAGTTCCCTTCATCTACGCGCCCAAATATGACTTTACCACCAGTAAACACTGGGTCGTACAtctcgCCTGTATGTGTCACTCTTTCCACTTCTTTAAGAGGCTGCTGGAGACGCTGTTTGTCCATCGCTTCTCTCATGGAACAATGCCGTTACGTAACATCTTCAAGAACTGTACCTACTACTGGGGCTTTGCAGCATGGATGGCCTATTACATTAACCACCCACTGTACACACCACCCATCTACGGGGAGCAACAAATCAGACTGGCTCTCGTCATATTCTTGttCTGTCAGATCGGCAACTTTTCCATCCACATTGCTCTTCGGAACCTCCGTCCACCAGGCTCTAAGACCAGAAAGATTCCCTATCCAACCAAGAACCCCTTCACCTGGATCTTCCTGCTGGTCTCCTGCCCCAACTACACCTATGAGCTGGGCTCCTGGCTTGGCTTCACGCTGATGACCCAGTGTCTGCCGGTGGCCTTCTTCACTTTGGTGGGTTTCATCCAGATGACTGTGTGGGCCAAGGGGAAGCACCGCAGCTACCTGAAGGAGTTCCGCGACTACCCTCCTGTCCGCTCACCCATCCTGCCCTTCATCCTGTAGAGGACTACTTGACCGCTCCCCTCGCCCCTTCCGCTCTCCCTGCTTGTAGGAGTCAAATACACCCCCTCCTAAACTGAGAGTGTGCTCTCCATTTTTCTACCCtccaaaatctccactggaACTTAGTAGACTACTGACTGAAAGAATCTAACCCTGTACCCTTTTCCTTTCCTCCCCCCCAACCAAATTTTCTTTTGCTTCCCATCTGCCATCCCTGTAATATTGAGTGCAAATGTGAAGCACtcgattgcttttttaaattgccCACAAACCCATTCTGATTGGTTAACCGACATGTGTTTGAGCTCCCAGAGCAGATATTCACCTTCAAACTACCCAGTGTATATCAATGGCATACTGTACATAGAtaatgttaaaggaacacggcgacttattgggaatttagcttattcaccgtatcccccagagttagacaagtc
>XM_039807379.1
CTAAGGTGGCCTCAGCAGTCGCACATTACTCCGCTGATTGGAGGCGCCTCTGTCACTCGACTCAGATATTAAGGAAGGGGGTGCAAGCTGCCAAGATGAAGCACTACGAGGTGGAGATACTGGATGCCAAGACCAAGGACAAGCTCTGCTTCCTGGACAAGGTCGAGCCAAATGCCACTATCGGAGAGATCAAGTCTATGTTCCACAAGAGCCATCCTCAGTGGTACCCAGCCAGGCAGTCCATTCGCCTCGACCCCAAGGGGAAGTCTCTGAAGGATGAGGATGTTCTGCAGCATCTCCCTGTGGGAACCACAGCAACCTTCTACTTCAGAGACCTGGGAGCCCAGATCAGCTGGGTCACAGTCTTTCTGACGGAGTACACCGGTCCTCTGGTCCTCTATCTGATGTTCTACTTCAGAGTTCCCTTCATCTACGCGCCCAAATATGACTTTACCACCAGTAAACACTGGGTCGTACAtctcgCCTGTATGTGTCACTCTTTCCACTTCTTTAAGAGGCTGCTGGAGACGCTGTTTGTCCATCGCTTCTCTCATGGAACAATGCCGTTACGTAACATCTTCAAGAACTGTACCTACTACTGGGGCTTTGCAGCATGGATGGCCTATTACATTAACCACCCACTGTACACACCACCCATCTACGGGGAGCAACAAATCAGACTGGCTCTCGTCATATTCTTGttCTGTCAGATCGGCAACTTTTCCATCCACATTGCTCTTCGGAACCTCCGTCCACCAGGCTCTAAGACCAGAAAGATTCCCTATCCAACCAAGAACCCCTTCACCTGGATCTTCCTGCTGGTCTCCTGCCCCAACTACACCTATGAGCTGGGCTCCTGGCTTGGCTTCACGCTGATGACCCAGTGTCTGCCGGTGGCCTTCTTCACTTTGGTGGGTTTCATCCAGATGACTGTGTGGGCCAAGGGGAAGCACCGCAGCTACCTGAAGGAGTTCCGCGACTACCCTCCTGTCCGCTCACCCATCCTGCCCTTCATCCTGTAGAGGACTACTTGACCGCTCCCCTCGCCCCTTCCGCTCTCCCTGCTTGTAGGAGTCAAATACACCCCCTCCTAAACTGAGAGTGTGCTCTCCATTTTTCTACCCtccaaaatctccactggaACTTAGTAGACTACTGACTGAAAGAATCTAACCCTGTACCCTTTTCCTTTCCTCCCCCCCAACCAAATTTTCTTTTGCTTCCCATCTGCCATCCCTGTAATATTGAGTGCAAATGTGAAGCACtcgattgcttttttaaattgccCACAAACCCATTCTGATTGGTTAACCGACATGTGTTTGAGCTCCCAGAGCAGATATTCACCTTCAAACTACCCAGTGTATATCAATGGCATACTGTACATAGAtaatgttaaaggaacacggcgacttattgggaatttagcttattcaccgtatcccccagagttagacaagt

Function

symbol description
tecr Enables very-long-chain enoyl-CoA reductase activity. Involved in fatty acid elongation; sphingolipid metabolic process; and very long-chain fatty acid biosynthetic process. Located in endoplasmic reticulum. Is integral component of endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: very-long-chain enoyl-CoA reductase isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807378.1 True 1650 mRNA 0.50 11 18539663 18548734
XM_039807379.1 False 1461 mRNA 0.50 12 18539664 18552834

Neighbor

gene id symbol gene type direction distance location
b3gntl1 b3gntl1,LOC105924764 coding downstream 727088 17794352 ~ 17812575 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding downstream 750683 17782589 ~ 17788980 (-)
LOC120560193 NA coding downstream 760386 17773284 ~ 17779277 (-)
LOC120560200 NA coding downstream 771488 17766923 ~ 17768175 (-)
LOC120556506 NA coding downstream 775854 17757669 ~ 17763809 (-)
tmed1b LOC104964575,LOC104925388,LOC103362227,LOC101073760 coding upstream 71274 18624108 ~ 18629125 (-)
LOC120571862 NA coding upstream 93325 18646159 ~ 18648400 (-)
LOC120557593 LOC103362234 coding upstream 122574 18675408 ~ 18702209 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding upstream 149604 18702438 ~ 18705754 (-)
LOC120567388 LOC100712387,LOC102193985,LOC102310568,LOC101487876 coding upstream 152570 18705404 ~ 18710720 (-)
G5787 NA non-coding downstream 9 18539322 ~ 18539654 (-)
G5786 NA non-coding downstream 574 18538868 ~ 18539089 (-)
G5785 ndufb7 non-coding downstream 2390 18536177 ~ 18537273 (-)
G5747 prkaca,LOC106526233 non-coding downstream 26482 18508398 ~ 18513181 (-)
G5739 NA non-coding downstream 111192 18423165 ~ 18428471 (-)
LOC120559135 NA non-coding upstream 16410 18569244 ~ 18573151 (-)
G5800 NA non-coding upstream 21216 18574050 ~ 18574254 (-)
G5801 NA non-coding upstream 22183 18575017 ~ 18575331 (-)
G5809 NA non-coding upstream 31839 18584673 ~ 18587536 (-)
G5894 NA non-coding upstream 77442 18630276 ~ 18689045 (-)
LOC120556582 NA other downstream 657904 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 691626 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 703902 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 825765 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1118565 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 332134 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 419136 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 470382 19023216 ~ 19037081 (-)
G6084 NA other upstream 936754 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1212059 19764893 ~ 19765387 (-)

Expression


Co-expression Network