LOC120563246


Basic Information

Item Value
gene id LOC120563246
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7718956 ~ 7743994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807380.1
CAAACTTCCATCAATAAAGAAAGGTTATCCTCTACTTGGAACAACGTTCGAACCAAACCGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCCGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGAACGTCTCCAGATGCGAGCTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAAAAGTTCAAGCAACAATACCTGGCAACAGTTATCTGTGAGGTGAACAGCCGGTCCCGTCTCAACACCGGCCTGGTCAAGGTGTTCGgcaaacacacaaccacaaccacAGCCACGCCAACAACTACGGTCACAACACGACCGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCAGCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAAAGAACTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAATACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAGTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAACAACTCCAGTCAAAACACGATGGACTACCACCCAAACAACTACCACTGCTCCAACTACCACCAGACCAATCCCAACAGGTGCCACAAAATCAACCCTAGGCACAAATGGAACCAGAGCTGGCAACAACAGAAGAAAGCGTGACGCAAGCAGCGAGGAACTGCTGAATGAAGATGATGCTGAGGAAGGTGGGAAACGTAAGAAACGATCCAGCAAGGAACAATCCAGTGAGGAGACCAAGCAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGATGAGACCTTCTGTAATTCTGGTTATCACTCCTCCAAAAACAAGTGTAACACAACCTGCGATGCCTTCACtgatgacaacattatggacgACATTGATTGCTTAGTGAAGACTGATCAGTGGAGGTTGTTTTTAAATTCTGCCTCTCGCGAGTGCCAATATGGCACCAACAACTTTTTCGACAAATGTTAAAAAGAAGCTGACACGTTCTCCACCTGCTGCTGAAGCTCCCACCAACAATCATTTCTTCTACCTTCAACGTGACCTTTGATCCTCATGGTTTCATCTCAAACATTGTGGAGAATTTCTTCATTTTAACCAGTGAGATTATTTTGTTTCAGTTCCTTTGTGGGTGAATTTGCCCTCAACTTGAAGTTGAACTGACAAATGTATTTTAGTAATTTGAATAGCTTTGATGATATTGTTT
>XM_039807381.1
CAAACTTCCATCAATAAAGAAAGGTTATCCTCTACTTGGAACAACGTTCGAACCAAACCGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCCGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGAACGTCTCCAGATGCGAGCTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAAAAGTTCAAGCAACAATACCTGGCAACAGTTATCTGTGAGGTGAACAGCCGGTCCCGTCTCAACACCGGCCTGGTCAAGGTGTTCGgcaaacacacaaccacaaccacAGCCACGCCAACAACTACGGTCACAACACGACCGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCAGCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAAAGAACTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAATACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAGTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAACAACTCCAGTCAAAACACGATGGACTACCACCCAAACAACTACCACTGCTCCAACTACCACCAGACCAATCCCAACAGGTGCCACAAAATCAACCCTAGGCACAAATGGAACCAGAGCTGGCAACAACAGAAGAAAGCGTGACGCAAGCAGCGAGGAACTGCTGAATGAAGATGATGCTGAGGAAGGTGGGAAACGTAAGAAACGATCCAGCAAGGAACAATCCAGTGAGGAGACCAAGCAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGATGAGACCTTCTGTAATTCTGGTTATCACTCCTCCAAAAACAAGTGTAACACAACCTGCGATGCCTTCACtgatgacaacattatggacgACATTGATTGCTTAGTGAAGACTGATCAGTGGAGGTTGTTTTTAAATTCTGCCTCTCGCGAGTGCCAATATgtcaacaacaactttttcGACAAATGTTAAAAAGAAGCTGACATGTTTTCCACCTGCTGCTGAAGCTCACACCAACAATCATTTCTTCTACCTTCAATGTGACCTTTGATCCTCATGGTTTCATCTCAAACATTGTGGAGCATTTTATAATTTCTTCATTTTAATTAACCAATGAGATTATTTTGTTTCAGTTCCTTTGTGGGTGAATTTGCCCCCAACTTCAAGTTGAACTGACAAATGTATTTTAGTCATTTGAATAGCTTTGATGATATTGTTTTACCACTTTAATCTACTTTAAAGTGATTATTTCAAGAtgagaaagacaaaaaataaaaatattttttgcatcTTCTGCTA
>XM_039807382.1
CAAACTTCCATCAATAAAGAAAGGTTATCCTCTACTTGGAACAACGTTCGAACCAAACCGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCCGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGAACGTCTCCAGATGCGAGCTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAAAAGTTCAAGCAACAATACCTGGCAACAGTTATCTGTGAGGTGAACAGCCGGTCCCGTCTCAACACCGGCCTGGTCAAGGTGTTCGgcaaacacacaaccacaaccacAGCCACGCCAACAACTACGGTCACAACACGACCGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCAGCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAAAGAACTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAACAACTCCAGTCAAAACACGATGGACTACCACCCAAACAACTACCACTGCTCCAACTACCACCAGACCAATCCCAACAGGTGCCACAAAATCAACCCTAGGCACAAATGGAACCAGAGCTGGCAACAACAGAAGAAAGCGTGACGCAAGCAGCGAGGAACTGCTGAATGAAGATGATGCTGAGGAAGGTGGGAAACGTAAGAAACGATCCAGCAAGGAACAATCCAGTGAGGAGACCAAGCAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGATGAGACCTTCTGTAATTCTGGTTATCACTCCTCCAAAAACAAGTGTAACACAACCTGCGATGCCTTCACtgatgacaacattatggacgACATTGATTGCTTAGTGAAGACTGATCAGTGGAGGTTGTTTTTAAATTCTGCCTCTCGCGAGTGCCAATATGGCACCAACAACTTTTTCGACAAATGTTAAAAAGAAGCTGACACGTTCTCCACCTGCTGCTGAAGCTCCCACCAACAATCATTTCTTCTACCTTCAACGTGACCTTTGATCCTCATGGTTTCATCTCAAACATTGTGGAGAATTTCTTCATTTTAACCAGTGAGATTATTTTGTTTCAGTTCCTTTGTGGGTGAATTTGCCCTCAACTTGAAGTTGAACTGACAAATGTATTTTAGTAATTTGAATAGCTTTGATGATATTGTTT
>XM_039807383.1
CAAACGACTACCACCCAACCAACAACCACCCAAATGACTACCACCCAACCGACAACCACTGCTCCAACAACCACCGAACCGACTACCACTGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGAACCGACTACCACTGCTCCAACAACCACCGAACCAACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACCGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACCGAACCGACTACCACTGCTCCAACAACCACCGAACCGACTACCACTGCTCCAACAACCACCCAACCAATCCCAACAGGTGCCACAAATTTGACCCTAAGCACAAATGGAACCGGAGCTGGCAGAAGAAAGCGTGAGGCAAGCAGCGAGGAGTCTGACTCGGCAGAGATCGACTTGTGGCTGGAGGAACTGCTGAACCGGCGCAACGAGACGGCGGATGAAGACGAGGCTGAGGAAGGTGGGGAACGTAAGAAACGATCCAGCAAGGACAGATCCAGTGAGGACCGATCCAGTGAGGAGACCAAGCAGTCGTCTTTCGGCCTTTACGGGATCTTCCAGCTGTCTGACAAGACCTTCTGTAATTCTGGTTATGGCTCCTCCAAAAACAAGTGCAACACAGCCTGCAATGCCTTCACtgatgacaacattatggacgACATTAATTGCTTTGTGAAGACTGATCAGTGGAGGTTGTTTTTAAATTCTGCCTCTCGCGAGTGCCAATATgtcaacaacaactttttcGACAAATGTTAAAAAGAAGCTGACATGTTTTCCACCTGCTGCTGAAGCTCACACCAACAATCATTTCTTCTACCTTCAATGTGACCTTTGATCCTCATGGTTTCATCTCAAACATTGTGGAGCATTTTATAATTTCTTCATTTTAATTAACCAATGAGATTATTTTGTTTCAGTTCCTTTGTGGGTGAATTTGCCCCCAACTTCAAGTTGAACTGACAAATGTATTTTAGTCATTTGAATAGCTTTGATGATATTGTTTTACCACTTTAATCTACTTTAAAGTGATTATTTCAAGAtgagaaagacaaaaaataaaaatattttttgcatcTTCTGCTA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04530 Tight junction
ko04670 Leukocyte transendothelial migration
ko05160 Hepatitis C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807380.1 False 1560 mRNA 0.47 5 7718956 7726536
XM_039807381.1 True 1652 mRNA 0.46 5 7718956 7743994
XM_039807382.1 False 1407 mRNA 0.48 6 7718956 7726536
XM_039807383.1 False 1251 mRNA 0.47 3 7740391 7743994

Neighbor

gene id symbol gene type direction distance location
LOC120570741 NA coding upstream 15125 7693585 ~ 7703831 (+)
pus10 pus10 coding upstream 78847 7612923 ~ 7640109 (+)
LOC120568176 NA coding upstream 281698 7390099 ~ 7437258 (+)
LOC120565053 NA coding upstream 479363 7238071 ~ 7239593 (+)
trnae-uuc_49 NA coding upstream 505400 7213485 ~ 7213556 (+)
LOC120563293 NA coding downstream 13692 7757686 ~ 7765391 (+)
LOC120563312 NA coding downstream 33868 7777862 ~ 7784253 (+)
LOC120565219 NA coding downstream 57183 7801177 ~ 7803946 (+)
LOC120563316 NA coding downstream 66780 7810774 ~ 7817275 (+)
LOC120565228 NA coding downstream 83595 7827589 ~ 7833507 (+)
G2524 NA non-coding upstream 58861 7659400 ~ 7660095 (+)
G2523 NA non-coding upstream 59933 7658404 ~ 7659023 (+)
G2512 cct4,LOC102790717,LOC104959023 non-coding upstream 115365 7602033 ~ 7603591 (+)
G2505 fam161a,LOC102790424 non-coding upstream 127880 7588643 ~ 7591076 (+)
G2486 NA non-coding upstream 161515 7554040 ~ 7557441 (+)
G2534 NA non-coding downstream 8719 7752713 ~ 7808364 (+)
LOC120563307 NA non-coding downstream 26719 7770713 ~ 7774926 (+)
G2545 ltv1 non-coding downstream 169758 7913752 ~ 7917581 (+)
G2561 NA non-coding downstream 219263 7963257 ~ 7965276 (+)
G2563 NA non-coding downstream 226795 7970789 ~ 7971223 (+)
G2530 NA other upstream 19416 7699265 ~ 7699540 (+)
G1973 NA other upstream 1184586 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1281739 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 1316316 6385601 ~ 6402640 (+)
snrpb2 snrpb2 other upstream 1802582 5876547 ~ 5916374 (+)
G2557 NA other downstream 197553 7941547 ~ 7948253 (+)
G2590 NA other downstream 345819 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 657721 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 873389 8617383 ~ 8643702 (+)
abcc10 abcc10,LOC107102248 other downstream 926177 8670171 ~ 8702455 (+)

Expression


Co-expression Network