LOC120563624


Basic Information

Item Value
gene id LOC120563624
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5401561 ~ 5407181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807930.1
TATAAGGGCCTGTgactctcttttccctccaaaCCAGACCAGGCAGAACAAAGAGTATTGATTTTCTTTCAGTGACAGTCATCAGcttgttcttcttctctgtGTCAGCCAATCACCACCTCAGCAAAGATGACATCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGTGGACTGTTAGCTGCATATGGTGAACCTGCCTGCCCTCCTGGTTGGACTCAGTTTGACACTCGCTGTTTCGCTTTCTACATGCAGAGAAAGACCTGGCTCGATGCAGAGACCTTCTGCCAGACCGCTGGTGGGCATCTGGCTTCCATCTACTCAGCTGAGGAAAATACATTCCTCCAAGACTTCATTTTCCAAGTGACCGGTGCACATACAACTTCCTGGATTGGAGGCACTGACACAGACAAGGTGGGTACATGGATGTGGAGTGATGGATCCAGATTGAAATACAAAAGCTGGGCTGCGGGGGAGCCTAACCTGCCTGGAGTGGAGGACTGTCTTCTGATGAACTGGGTTGgatTCACCAGCTGGTTCGACTGGGTTTGTACCAACCAGGCTTCTTTCGTCTGCTCCAAGAACAGCGTGTAACTCTACCACGCCATCATGATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCGGCAGACAGAAacagctctctgctctctgatgACTTACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAACATCAGTACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCATAATAATTAGATTTCTCTCTGAGACTTATTGTTCAGATCGATACAACTCTTGTGTGTGCGCTAACTATGAAGTTCCCTCGAGCAGATGTTAGctcagcataaagactggaaacagggggaaacagctagcatagcttagcataaagactggaaacggacagaaacagctagcttagcttagcataaagactggaaacagcgtGCCTGACTCCGtccaaatgtaaatgtaaaaacaaataagTAATTGGACTTAAATCTATAGTAAATAACACaatgaaatacagaaaacatttgaatactCACACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCACACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGTACGCTAAAGATGAAGTTCCCTCAAGCAGGCGTTAGCCttgtttagcataaagactggaaacagggggaaacagctagcctagcttagcataaagactggaaacagctagcctgactcCATCCAAAGGTAAACCTACCAGACATGAGTGGTGACGATCTTTTTATCCAAAATGGCCatatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTATAATAACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTAGCTCCTTTTTATTCCTAAAACCGATATGTTGTGTTCTTTATTCAGCAGATTCTCTtcactatatactatatactcaAATAagcattcaaaaataaaagacatattgtcacaaaaacagtg
>XM_039807939.1
AGACCAGGCAGAACAAAGAGTATTGATATCTGTGACAGTTTCTTTCAGTGACAGTCATCAGcttgttcttcttctctgtGTCAGCCAATCACCACCTCAGCAAAGATGACATCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGTGGACTGTTAGCTGCATATGGTGAACCTGCCTGCCCTCCTGGTTGGACTCAGTTTGACACTCGCTGTTTCGCTTTCTACATGCAGAGAAAGACCTGGCTCGATGCAGAGACCTTCTGCCAGACCGCTGGTGGGCATCTGGCTTCCATCTACTCAGCTGAGGAAAATACATTCCTCCAAGACTTCATTTTCCAAGTGACCGGTGCACATACAACTTCCTGGATTGGAGGCACTGACACAGACAAGGTGGGTACATGGATGTGGAGTGATGGATCCAGATTGAAATACAAAAGCTGGGCTGCGGGGGAGCCTAACCTGCCTGGAGTGGAGGACTGTCTTCTGATGAACTGGGTTGgatTCACCAGCTGGTTCGACTGGGTTTGTACCAACCAGGCTTCTTTCGTCTGCTCCAAGAACAGCGTGTAACTCTACCACGCCATCATGATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCGGCAGACAGAAacagctctctgctctctgatgACTTACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAACATCAGTACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCATAATAATTAGATTTCTCTCTGAGACTTATTGTTCAGATCGATACAACTCTTGTGTGTGCGCTAACTATGAAGTTCCCTCGAGCAGATGTTAGctcagcataaagactggaaacagggggaaacagctagcatagcttagcataaagactggaaacggacagaaacagctagcttagcttagcataaagactggaaacagcgtGCCTGACTCCGtccaaatgtaaatgtaaaaacaaataagTAATTGGACTTAAATCTATAGTAAATAACACaatgaaatacagaaaacatttgaatactCACACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCACACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGTACGCTAAAGATGAAGTTCCCTCAAGCAGGCGTTAGCCttgtttagcataaagactggaaacagggggaaacagctagcctagcttagcataaagactggaaacagctagcctgactcCATCCAAAGGTAAACCTACCAGACATGAGTGGTGACGATCTTTTTATCCAAAATGGCCatatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTATAATAACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTAGCTCCTTTTTATTCCTAAAACCGATATGTTGTGTTCTTTATTCAGCAGATTCTCTtcactatatactatatactcaAATAagcattcaaaaataaaagacatattgtcacaaaaacagtg
>XM_039807947.1
CAGAACAAAGAGTATTGATTGACAGTCATCAGcttgttcttcttctctgtGTCAGCCAATCACCACCTCAGCAAAGATGACATCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGTGGACTGTTAGCTGCATATGGTGAACCTGCCTGCCCTCCTGGTTGGACTCAGTTTGACACTCGCTGTTTCGCTTTCTACATGCAGAGAAAGACCTGGCTCGATGCAGAGACCTTCTGCCAGACCGCTGGTGGGCATCTGGCTTCCATCTACTCAGCTGAGGAAAATACATTCCTCCAAGACTTCATTTTCCAAGTGACCGGTGCACATACAACTTCCTGGATTGGAGGCACTGACACAGACAAGGTGGGTACATGGATGTGGAGTGATGGATCCAGATTGAAATACAAAAGCTGGGCTGCGGGGGAGCCTAACCTGCCTGGAGTGGAGGACTGTCTTCTGATGAACTGGGTTGgatTCACCAGCTGGTTCGACTGGGTTTGTACCAACCAGGCTTCTTTCGTCTGCTCCAAGAACAGCGTGTAACTCTACCACGCCATCATGATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCGGCAGACAGAAacagctctctgctctctgatgACTTACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAACATCAGTACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCATAATAATTAGATTTCTCTCTGAGACTTATTGTTCAGATCGATACAACTCTTGTGTGTGCGCTAACTATGAAGTTCCCTCGAGCAGATGTTAGctcagcataaagactggaaacagggggaaacagctagcatagcttagcataaagactggaaacggacagaaacagctagcttagcttagcataaagactggaaacagcgtGCCTGACTCCGtccaaatgtaaatgtaaaaacaaataagTAATTGGACTTAAATCTATAGTAAATAACACaatgaaatacagaaaacatttgaatactCACACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCACACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGTACGCTAAAGATGAAGTTCCCTCAAGCAGGCGTTAGCCttgtttagcataaagactggaaacagggggaaacagctagcctagcttagcataaagactggaaacagctagcctgactcCATCCAAAGGTAAACCTACCAGACATGAGTGGTGACGATCTTTTTATCCAAAATGGCCatatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTATAATAACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTAGCTCCTTTTTATTCCTAAAACCGATATGTTGTGTTCTTTATTCAGCAGATTCTCTtcactatatactatatactcaAATAagcattcaaaaataaaagacatattgtcacaaaaacagtg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko00380 Tryptophan metabolism
ko04146 Peroxisome
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807930.1 True 1731 mRNA 0.41 7 5401561 5407181
XM_039807939.1 False 1707 mRNA 0.40 7 5401561 5407146
XM_039807947.1 False 1678 mRNA 0.40 7 5401561 5407138

Neighbor

gene id symbol gene type direction distance location
LOC120563650 NA coding downstream 125865 5243915 ~ 5275696 (-)
LOC120563200 LOC103374761 coding downstream 335371 5037606 ~ 5066190 (-)
LOC120563519 LOC103374759 coding downstream 550987 4827103 ~ 4850574 (-)
LOC120563156 NA coding downstream 608518 4785365 ~ 4793043 (-)
LOC120563484 NA coding downstream 640104 4695160 ~ 4761457 (-)
LOC120563585 NA coding upstream 62882 5470063 ~ 5471326 (-)
LOC120563643 NA coding upstream 64265 5471446 ~ 5472005 (-)
kif16ba kif16b coding upstream 406184 5813365 ~ 5874875 (-)
LOC120563808 NA coding upstream 480288 5887469 ~ 5892793 (-)
LOC120564640 NA coding upstream 492375 5899556 ~ 5905631 (-)
G2034 NA non-coding downstream 23775 5375492 ~ 5377786 (-)
G2009 NA non-coding downstream 55239 5320067 ~ 5346322 (-)
G2022 NA non-coding downstream 60054 5340534 ~ 5341507 (-)
G1994 NA non-coding downstream 73804 5259990 ~ 5327757 (-)
LOC120563682 NA non-coding downstream 200733 5200207 ~ 5200828 (-)
G2047 NA non-coding upstream 8155 5415336 ~ 5415888 (-)
G2056 NA non-coding upstream 51600 5458781 ~ 5459073 (-)
G2064 NA non-coding upstream 94872 5502053 ~ 5507095 (-)
G2070 NA non-coding upstream 168671 5575852 ~ 5624485 (-)
G2076 NA non-coding upstream 282782 5689963 ~ 5692475 (-)
G2010 NA other downstream 48409 5231497 ~ 5353152 (-)
LOC120563591 LOC107656489 other downstream 251142 5148516 ~ 5150419 (-)
LOC120564103 NA other downstream 266256 5114020 ~ 5135305 (-)
G1726 NA other downstream 303927 5097369 ~ 5097634 (-)
G1722 hnrnpll,LOC108249392,LOC104956991,LOC106530872,LOC103368822 other downstream 316043 5076606 ~ 5085518 (-)
LOC120563672 esf1,LOC108229506 other upstream 69364 5476545 ~ 5499993 (-)
LOC120563692 NA other upstream 324258 5731439 ~ 5736986 (-)
G2146 NA other upstream 703958 6111139 ~ 6111592 (-)
LOC120563747 LOC104946033 other upstream 793766 6200947 ~ 6206890 (-)
G2177 NA other upstream 859425 6266606 ~ 6267238 (-)

Expression


Co-expression Network