LOC120563868


Basic Information

Item Value
gene id LOC120563868
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6105145 ~ 6109440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808319.1
GAGCTGCAGTAAGAGGCGGAGCTACACTGGAAAGAGGAGAGCTTCAACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTCGAGAcaagtctctgtttctctctgaaagaaaactcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgTGTGTAGATATGGCTGCGGCAAACTATCTGCCATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTAGCCATACCATGTGGTCACAACTTCTGCAAGAACTGCATCAATGAACAATGGAATTTCAATGAGCAGTACATGTGTCCGATGTGTAAAAAGGTTTTCAACACAAAACCTGAGCTGCATGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtcTCCTACTGTGAGACTCACCTGGAGTCTCATCTGACCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccaaccagacatgtgtctgcatgGTCTGTACTGTTTTAGATCACAAGAAGCATGATGTTGTTCCTCTGAAAGAAGAATATGAAGAAAAGAAGGTCAAGCTGGAGGCTGAAATTCagcagatgatccagaagagacgactgaagattcaggagatcaaacactcagtcgacctcagtgaggaagatgcagacagagagctagcagaaggtgttcagttcttcacttctctgaaggagtctgttgaGAGAGGCCTGAACGAGCTCACTGACAcgatcaaagagaagcagaaaacaacagaaaaacaggctGAAGCTTTCATCAAAGAGCTGAAACTGGAAATTTCTGAGCTGATGAAGAGaagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAAAACCAACCAACCTTCACCCACCAAGGACTGGACAAAGGTCAGCGTCCGTCCATCGTATGCAGGAACTGTGGTGAGAGCTGTAGCTCAGCTGGAGGAGACGCTCAGTAAAGAGATGAAGAAGCTGGGTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTAATCTCATCCTGTCTCATGGTAGGAAACAAGTGTGTACTGGTAAGGTTAAGAAGAATCTcccaaacaacccagagagatTTTCTCTCATtccctgtgttttaggaaagCAGAGTTTCTCTTCTGGCAAATATTACTTTGAGGTTCAAGTTAAAGGAAAGACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGGTCAACAGGAAGGAAAACATCCCTCTGAACCCTGAGGATGGTTACTGGACTATATGGATGATAAATGGAAATGAGTACGAAGCTCTTGCTGGCCATcctgtccatctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagcttttatctactcctttactggctgctccttcactgagaaactcttcTTATACCTTTGGCCTGGGAATAATGAAGATGGTAAAAATTCTGCAcctctgatcatctctcctgtcagagTAAACTAATCACTCATCTTATTTCATGTATTGATACATTTCTATTAACAAATAACAAATGTACATTTAATAGTTTacatcttatttgtttacagaATCTGTTTCCTGTGGTGATTGATTTTTTACTATATGTATCTGATGACAGAGTCAACCCATTCATTTGATGCATCATGACGCACGTTATGTGGACGATATCTATTTCCACCTCTGTTAAACCCACAGACATTAATTATAACTTCCAGAAGAAATCAGTTTCTAAAGACAACAAATATGTCAAGATGATGAATCATACTTTCTAACTGATGTGCAGCCACGGAAAATATATAGCTGAATATTTCATTGCGTCAGGAAGCTTAATTTAAGAGTAAGGCCTATGTGGCCGTTTGGCTCGGTTGGTGGAGCAGGCCCACATGTGTAGAGGCTTGttcctcgatgcagaaggtccagggttcgaatccgacctgtggtgGTTTACCGCGTGTCTTCCCCCTTCTCTCATCTCAGTTTTCCTATCCCAATAAAGGCCTatttaaaaatctttaaaaaaaaagtaaggcaTATCACATCCtatagtgtctacagaacacaGTATTTGTCGTTATACCGGCTATAAAAACTACTTCTcagttttgtttggttttgtgaGTCCTGATAAGATGGTTTATGAGTCAAAGAAatctgtaaataataataaataaaaaatgtattgtttataATGGCAGCTGAGGGATACAGCGTTCCTAGTCAATACTAGACCAATGAAATTACCCTTTTAATGTTCACAGGCAGCCACAGTCTAACGTCATCGTGACTCCTAACTCTTTACCAGGAGAACCAGCTGATACGCTACTGGTTACTAATGCCCgtgaaaaataatgtgtgtatCTGCCTTGTGATTTGAATCCGCTCCAAAATGTATTGGGTTCTTctttggcccatgctacaccatTCCAAGtttcattatattattatattatattgatgTGGGATTTGTGATCGGTCTTGTTGTTTTGTTAGAAGTCATGTTTTTACTGTTGGATTTAAACTGTGCCCTGCCTTGGGactgcagatgtaaattagcctaaggctaactctggtacaatgCATCATATGGCAACATTATGTTAAAAATTGTACATGGTCCctaacaaataaaatgaatacaaataaaa
>XM_039808329.1
GAGCTGCAGTAAGAGGCGGAGCTACACTGGAAAGAGGAGAGCTTCAACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTCGAGAcaagtctctgtttctctctgaaagaaaactcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgATATGGCTGCGGCAAACTATCTGCCATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTAGCCATACCATGTGGTCACAACTTCTGCAAGAACTGCATCAATGAACAATGGAATTTCAATGAGCAGTACATGTGTCCGATGTGTAAAAAGGTTTTCAACACAAAACCTGAGCTGCATGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtcTCCTACTGTGAGACTCACCTGGAGTCTCATCTGACCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccaaccagacatgtgtctgcatgGTCTGTACTGTTTTAGATCACAAGAAGCATGATGTTGTTCCTCTGAAAGAAGAATATGAAGAAAAGAAGGTCAAGCTGGAGGCTGAAATTCagcagatgatccagaagagacgactgaagattcaggagatcaaacactcagtcgacctcagtgaggaagatgcagacagagagctagcagaaggtgttcagttcttcacttctctgaaggagtctgttgaGAGAGGCCTGAACGAGCTCACTGACAcgatcaaagagaagcagaaaacaacagaaaaacaggctGAAGCTTTCATCAAAGAGCTGAAACTGGAAATTTCTGAGCTGATGAAGAGaagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAAAACCAACCAACCTTCACCCACCAAGGACTGGACAAAGGTCAGCGTCCGTCCATCGTATGCAGGAACTGTGGTGAGAGCTGTAGCTCAGCTGGAGGAGACGCTCAGTAAAGAGATGAAGAAGCTGGGTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTAATCTCATCCTGTCTCATGGTAGGAAACAAGTGTGTACTGGTAAGGTTAAGAAGAATCTcccaaacaacccagagagatTTTCTCTCATtccctgtgttttaggaaagCAGAGTTTCTCTTCTGGCAAATATTACTTTGAGGTTCAAGTTAAAGGAAAGACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGGTCAACAGGAAGGAAAACATCCCTCTGAACCCTGAGGATGGTTACTGGACTATATGGATGATAAATGGAAATGAGTACGAAGCTCTTGCTGGCCATcctgtccatctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagcttttatctactcctttactggctgctccttcactgagaaactcttcTTATACCTTTGGCCTGGGAATAATGAAGATGGTAAAAATTCTGCAcctctgatcatctctcctgtcagagTAAACTAATCACTCATCTTATTTCATGTATTGATACATTTCTATTAACAAATAACAAATGTACATTTAATAGTTTacatcttatttgtttacagaATCTGTTTCCTGTGGTGATTGATTTTTTACTATATGTATCTGATGACAGAGTCAACCCATTCATTTGATGCATCATGACGCACGTTATGTGGACGATATCTATTTCCACCTCTGTTAAACCCACAGACATTAATTATAACTTCCAGAAGAAATCAGTTTCTAAAGACAACAAATATGTCAAGATGATGAATCATACTTTCTAACTGATGTGCAGCCACGGAAAATATATAGCTGAATATTTCATTGCGTCAGGAAGCTTAATTTAAGAGTAAGGCCTATGTGGCCGTTTGGCTCGGTTGGTGGAGCAGGCCCACATGTGTAGAGGCTTGttcctcgatgcagaaggtccagggttcgaatccgacctgtggtgGTTTACCGCGTGTCTTCCCCCTTCTCTCATCTCAGTTTTCCTATCCCAATAAAGGCCTatttaaaaatctttaaaaaaaaagtaaggcaTATCACATCCtatagtgtctacagaacacaGTATTTGTCGTTATACCGGCTATAAAAACTACTTCTcagttttgtttggttttgtgaGTCCTGATAAGATGGTTTATGAGTCAAAGAAatctgtaaataataataaataaaaaatgtattgtttataATGGCAGCTGAGGGATACAGCGTTCCTAGTCAATACTAGACCAATGAAATTACCCTTTTAATGTTCACAGGCAGCCACAGTCTAACGTCATCGTGACTCCTAACTCTTTACCAGGAGAACCAGCTGATACGCTACTGGTTACTAATGCCCgtgaaaaataatgtgtgtatCTGCCTTGTGATTTGAATCCGCTCCAAAATGTATTGGGTTCTTctttggcccatgctacaccatTCCAAGtttcattatattattatattatattgatgTGGGATTTGTGATCGGTCTTGTTGTTTTGTTAGAAGTCATGTTTTTACTGTTGGATTTAAACTGTGCCCTGCCTTGGGactgcagatgtaaattagcctaaggctaactctggtacaatgCATCATATGGCAACATTATGTTAAAAATTGTACATGGTCCctaacaaataaaatgaatacaaataaaa

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG:

id description
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808319.1 True 3001 mRNA 0.43 2 6105145 6109440
XM_039808329.1 False 2994 mRNA 0.43 2 6105145 6109440

Neighbor

gene id symbol gene type direction distance location
LOC120563871 NA coding upstream 11418 6088852 ~ 6093727 (+)
prokr1a LOC103383410,LOC101078632 coding upstream 46556 6039211 ~ 6058589 (+)
LOC120563910 NA coding upstream 301911 5790297 ~ 5803234 (+)
LOC120564476 NA coding upstream 497344 5606454 ~ 5607801 (+)
LOC120564466 NA coding upstream 514137 5589669 ~ 5591008 (+)
LOC120563973 NA coding downstream 10954 6120394 ~ 6127443 (+)
LOC120563935 NA coding downstream 23195 6132635 ~ 6146027 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding downstream 38940 6148380 ~ 6157391 (+)
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding downstream 53966 6163406 ~ 6232599 (+)
LOC120569490 LOC105918390 coding downstream 228863 6338303 ~ 6377691 (+)
G1900 NA non-coding upstream 41508 6062128 ~ 6063637 (+)
G1825 NA non-coding upstream 73952 5982165 ~ 6031193 (+)
G1831 LOC103463036 non-coding upstream 83125 6004393 ~ 6022020 (+)
G1840 NA non-coding upstream 88504 5960215 ~ 6016641 (+)
G1898 NA non-coding downstream 1774 6111214 ~ 6111601 (+)
G1905 NA non-coding downstream 9607 6119047 ~ 6119529 (+)
G1906 NA non-coding downstream 15927 6125367 ~ 6126533 (+)
G1826 NA non-coding downstream 99315 6208755 ~ 6217056 (+)
G1915 NA non-coding downstream 124903 6234343 ~ 6288169 (+)
snrpb2 snrpb2 other upstream 188771 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 633736 5387393 ~ 5471409 (+)
G1775 NA other upstream 730238 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 777228 5235346 ~ 5327917 (+)
G1756 NA other upstream 882401 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 276161 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 297960 6407400 ~ 6437217 (+)
G1973 NA other downstream 423001 6532441 ~ 6534370 (+)
G2530 NA other downstream 1589825 7699265 ~ 7699540 (+)
G2557 NA other downstream 1832107 7941547 ~ 7948253 (+)

Expression


Co-expression Network