LOC120563935


Basic Information

Item Value
gene id LOC120563935
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6132635 ~ 6146027 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808473.1
TGTAGGCCAACAATGAGAACATTTTTAATTGAGTAAAAGGATCCTTCCCCGGCTTTCACGTAGTATCGCGATGTCACGCACAGGGAAGTGACGTTGACGCGAGGTGTCTTCGATTTGATAGGCCAGTGATTATTACCGGATATTACATTTTACTGTGTATGGATTTTCCGCGCCAAATGGGCAGTCCGCTGTCATTTTAAATCTCCGCAATTGACGGCGAGAAGTTTTTAAATATTCTTCTATTAATAATTAcagtttattgtattttaacaatGTCCGTGACACTGGTGACTCTGCTGCTGATCTTACAGTTGTTTTATGCCGGAACTCATCCCACTTGCCCGTTTCCGACGATAGAGGCAGTCGAAGACGATGATGTCGCTCTACAGTGTCGCCTGGACAACTTGTCCGCCCGCACCTTGGATGTGGCGAGAGCTGTCCGCGGTACCTATGGCGACGTCTGCTCCTATCGGAAAAGAAAGGACCGGATGGATCGATGCGGAGGCTTCGTAGCGCTGCTGTCCCACGGTGGGGAGTACAAAGTCTTTCTCCAAAAGCTGCGAGCCCGTTCTGTTGTTAGCATCCCTGATGtaTCCAAAAACCACCAGAACGGGACAAAGACCGTACCTCCAGTGGAAGAAGTGACCGAGTCAAACAGTCGTGGGGGGGGGAACGGGAAGGCTGCCCGCAGCCGCATCGTTCCCGCGGTGGTCTTCATTCTCGGCGGCGTCCTCGTCGTGGTTCTGGTGAACACGTGGAAGGATGCaccCTCTCTGAGATCCACCACGCCCACCCTCGCTCACAACTTCGCCGAAACTCTGCCGATAGAGATGAGCGCGAAGATCTTCGGCATGTTGGACGCGGAGAGCCTGTCCAGCGCCGCGCGCACCTGCCGGCTGTGGCACTACATCATCGCGGAGAGCGAGCAGGTGAGCGTGCAACGCTACCACGCCgcggccgagagacgtgcgtcggCACACGTACGTAACCCACGGCGTAGATTTTACACAGAAGTACAAATCGAGCTTTAGGAGGCAAACGCAgcgctttcacccaggagaccggacGGTTACCGTCTCTGGTTTAGgcctgaaacgattcctcgaataattcgattacaaaaaaatcCTCGATTCAAAATGACTTTCCTCGAAGCTTCATTAAATCAacgttaccaacgttgtatcgctgacggacggtgtttccgcacggagcatttttactgtcgcacagacgcggctcagt
>XM_039808483.1
TGTAGGCCAACAATGAGAACATTTTTAATTGAGTAAAAGGATCCTTCCCCGGCTTTCACGTAGTATCGCGATGTCACGCACAGGGAAGTGACGTTGACGCGAGGTGTCTTCGATTTGATAGGCCAGTGATTATTACCGGATATTACATTTTACTGTGTATGGATTTTCCGCGCCAAATGGGCAGTCCGCTGTCATTTTAAATCTCCGCAATTGACGGCGAGAAGTTTTTAAATATTCTTCTATTAATAATTAcagtttattgtattttaacaatGTCCGTGACACTGGTGACTCTGCTGCTGATCTTACAGTTGTTTTATGCCGGAACTCATCCCACTTGCCCGTTTCCGACGATAGAGGCAGTCGAAGACGATGATGTCGCTCTACAGTGTCGCCTGGACAACTTGTCCGCCCGCACCTTGGATGTGGCGAGAGCTGTCCGCGGTACCTATGGCGACGTCTGCTCCTATCGGAAAAGAAAGGACCGGATGGATCGATGCGGAGGCTTCGTAGCGCTGCTGTCCCACGGTGGGGAGTACAAAGTCTTTCTCCAAAAGCTGCGAGCCCGTTCTGTTGTTAGCATCCCTGATGtaTCCAAAAACCACCAGAACGGGACAAAGACCGTACCTCCAGTGGAAGAAGTGACCGAGTCAAACAGTCGTGGGGGGGGGAACGGGAAGGCTGCCCGCAGCCGCATCGTTCCCGCGGTGGTCTTCATTCTCGGCGGCGTCCTCGTCGTGGTTCTGGTGAACACGTGGAAGGATGCaccCTCTCTGAGATCCACCACGCCCACCCTCGCTCACAACTTCGCCGAAACTCTGCCGATAGAGATGAGCGCGAAGATCTTCGGCATGTTGGACGCGGAGAGCCTGTCCAGCGCCGCGCGCACCTGCCGGCTGTGGCACTACATCATCGCGGAGAGCGAGCAGAGCCCCAGGTGGGACGGAGGGTCTTCAGCTCTGATCCAGGTGTTCTGGGGTCGGCCTCTTCTACGTCTGCAATATTGCGTTATACATTGAATTCTAGTCATCGTCGCAGCTACGTCTCGTCTCGTTTTCATCACGTGATAAAGCTTCGTCGACGACGATGTTTGGACGTAATTGTCGTCGTACGGAAGCAGCGCTAGGAGACCCAAACGCCGACCTCATCGTATGATATTCGGAGGACTTGTTGAAAATGTAAGATGGTCTCTATTGTCCCATAGGGACGATGACTTCCACATCATCTTACTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808473.1 True 1245 mRNA 0.53 5 6132635 6141546
XM_039808483.1 False 1235 mRNA 0.52 6 6132635 6146027

Neighbor

gene id symbol gene type direction distance location
LOC120563973 NA coding upstream 5192 6120394 ~ 6127443 (+)
LOC120563868 NA coding upstream 23195 6105145 ~ 6109440 (+)
LOC120563871 NA coding upstream 38908 6088852 ~ 6093727 (+)
prokr1a LOC103383410,LOC101078632 coding upstream 74046 6039211 ~ 6058589 (+)
LOC120563910 NA coding upstream 329401 5790297 ~ 5803234 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding downstream 2353 6148380 ~ 6157391 (+)
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding downstream 17379 6163406 ~ 6232599 (+)
LOC120569490 LOC105918390 coding downstream 192276 6338303 ~ 6377691 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding downstream 364198 6510225 ~ 6528948 (+)
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding downstream 445409 6591436 ~ 6659319 (+)
G1897 NA non-coding upstream 2168 6039592 ~ 6130467 (+)
G1906 NA non-coding upstream 6102 6125367 ~ 6126533 (+)
G1905 NA non-coding upstream 13106 6119047 ~ 6119529 (+)
G1898 NA non-coding upstream 21034 6111214 ~ 6111601 (+)
G1900 NA non-coding upstream 68998 6062128 ~ 6063637 (+)
G1826 NA non-coding downstream 62728 6208755 ~ 6217056 (+)
G1915 NA non-coding downstream 88316 6234343 ~ 6288169 (+)
LOC120564462 NA non-coding downstream 112362 6258389 ~ 6261729 (+)
LOC120568420 NA non-coding downstream 116297 6262324 ~ 6265186 (+)
G1926 NA non-coding downstream 127809 6273836 ~ 6275510 (+)
snrpb2 snrpb2 other upstream 216261 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 661226 5387393 ~ 5471409 (+)
G1775 NA other upstream 757728 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 804718 5235346 ~ 5327917 (+)
G1756 NA other upstream 909891 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 239574 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 261373 6407400 ~ 6437217 (+)
G1973 NA other downstream 386414 6532441 ~ 6534370 (+)
G2530 NA other downstream 1553238 7699265 ~ 7699540 (+)
G2557 NA other downstream 1795520 7941547 ~ 7948253 (+)

Expression


Co-expression Network