cnrip1a (cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542)


Basic Information

Item Value
gene id cnrip1a
gene name cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6148380 ~ 6157391 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808530.1
CGAGAGAGCCAGATATATATCCCGGGATAATGGACGACGTCCCTCCGATCATCGACATCTCCATCTCGCTGCGGATCCAGCCCAACGACGGGCCCGTCTTCTTCAAGGTGGACGGGACCCGGTTCGGCCAGAGCCGGACCATCAAGCTGCTCACGGGCTCCAAATACAAGATCCAGGTGGCTCTGAAGCCTGGAAACGTCGAGGCCACcAACATGAACATCGGAGGCATCATCTTCGCTCTGGAGCAGCAGTCCCGGGACGAGGAGTCGGTGGTTTATCAAGGCCAGTACGACACCGAGGGCGTCCCGCACACCAAGAGCGGAGACCGCCAGCCGGTCCAAGTCAGCATAGAGTTCAACAAAGCCGGGACGTTTGAGACGGTCTGGCAGGCCAAATACTACAACTACTACAAGAGGGAGCACTGCCAGTTCGGCAACAAGTTCAGCACCATCGACTACGAATGCAAGCCTAACGAGACGCGGACCCTCATGTGGATCAACAAGGAGGCGTTCAACTGAGTCCGCCCCACGACCTTTTCCACCCTCCAGACACCAAATACCAAGCACAGTTGCACACGgactttaaaacatcagcataaCAACGGGAGGTCTGGTATTTGGGTTGGTTTATCAAAAAAAGACGAGAGAGAACAGCTGTCTGCTATAAGGGTCTTTAatcctcatgttgtcctcgggttgaatttgacccgttctcaaaacttctatatcagaaatatgggtttctttttaagcAAATTACTCAAAACATTAAGTACAATTGCAAGTACTCGATCAGTACTTACATTGAATTGTGGGTATTCAGTTTCATAGCATTTGGAAATATTGAAATGGCTTCAAAACGTGACTAAACTTTGATGTACTGTGCACACGTCTGTGATTCTCCACCAACATACATTACgttcctctaatattagtctaaatcattcatcatttcaaaatcAGGTATTATCTCCTATAAATGagatttattgaccatgaattccaaaaaataCGTGTAAAACTATTGGCAATAAGTTGGTGTCAGTGAACGGTAGCATCGAAAATGtggcaaaaaagtgacaaaaacattgaaaaaagtg

Function

symbol description
cnrip1 Enables protein C-terminus binding activity and type 1 cannabinoid receptor binding activity. Involved in negative regulation of signaling receptor activity. Located in cytoplasm and plasma membrane.

NR:

description
PREDICTED: CB1 cannabinoid receptor-interacting protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808530.1 True 1099 mRNA 0.47 3 6148380 6157391

Neighbor

gene id symbol gene type direction distance location
LOC120563935 NA coding upstream 2353 6132635 ~ 6146027 (+)
LOC120563973 NA coding upstream 20937 6120394 ~ 6127443 (+)
LOC120563868 NA coding upstream 38940 6105145 ~ 6109440 (+)
LOC120563871 NA coding upstream 54653 6088852 ~ 6093727 (+)
prokr1a LOC103383410,LOC101078632 coding upstream 89791 6039211 ~ 6058589 (+)
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding downstream 6015 6163406 ~ 6232599 (+)
LOC120569490 LOC105918390 coding downstream 180912 6338303 ~ 6377691 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding downstream 352834 6510225 ~ 6528948 (+)
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding downstream 434045 6591436 ~ 6659319 (+)
LOC120564833 mdha,mdh1,LOC107382285,LOC106536176 coding downstream 538193 6695584 ~ 6722958 (+)
G1897 NA non-coding upstream 17913 6039592 ~ 6130467 (+)
G1906 NA non-coding upstream 21847 6125367 ~ 6126533 (+)
G1905 NA non-coding upstream 28851 6119047 ~ 6119529 (+)
G1898 NA non-coding upstream 36779 6111214 ~ 6111601 (+)
G1900 NA non-coding upstream 84743 6062128 ~ 6063637 (+)
G1826 NA non-coding downstream 51364 6208755 ~ 6217056 (+)
G1915 NA non-coding downstream 76952 6234343 ~ 6288169 (+)
LOC120564462 NA non-coding downstream 100998 6258389 ~ 6261729 (+)
LOC120568420 NA non-coding downstream 104933 6262324 ~ 6265186 (+)
G1926 NA non-coding downstream 116445 6273836 ~ 6275510 (+)
snrpb2 snrpb2 other upstream 232006 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 676971 5387393 ~ 5471409 (+)
G1775 NA other upstream 773473 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 820463 5235346 ~ 5327917 (+)
G1756 NA other upstream 925636 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 228210 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 250009 6407400 ~ 6437217 (+)
G1973 NA other downstream 375050 6532441 ~ 6534370 (+)
G2530 NA other downstream 1541874 7699265 ~ 7699540 (+)
G2557 NA other downstream 1784156 7941547 ~ 7948253 (+)

Expression


Co-expression Network