stra6l (LOC104958947)


Basic Information

Item Value
gene id stra6l
gene name LOC104958947
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 20033839 ~ 20042084 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810678.1
ACACTGGGAGAGAGGacataaaaaaacagagacataAAGTGTTGAATcctgaggtcaaaggtcaagtgTGTGAGTCACATGGTTGAAACCAGGAAACAGAGAAGTGGAGTATATCCAGTCACTTCCCTCATCTTTAGCGCAGGAACAAAGCGTTTCAGACTTCAGTGAACTGACTTACCAATGATGATAAGAAACCGAGTGGAACATGAGGTCTCCACCATTAAGGACTGTCAAAATGGAATATCTATTGAGCTCTTCCTGCACTTTTCACTCATACCAGCAGTTGTGATTGTAGGGGTGCTCTCATTCCTCCAGAAGAGAGCCCAGAAACTGGCCATCGATCACAGATTGCCCTTCCTGCGGGGACGTTTTGCCATTGTGGTGCCTTTGGATACTATAGGCAGCCTCAGTAATCGTTGGTCCTATGGGTTTGCATTTGGGGCCGTGTCCGCCAGCGTCCTTCTGCTCTTTTCTGAACGTTACATCCCCTTCTCTGTCCCGGCCTGGGCCCGAGCTATAGTGTATCTGGTTGGAGCTTTAGAGGTGGGCCTGGTCTATTTCCCTTTCTTTGCCTGTCTGTCAACACCTTTCAGAGCAGCTGGGGCAGTTCTGGGAATATGCTACTCTTTGGCCTGgatCGTCGTTACAGTCTGGGATTCATTCACCTGTCCCAGTGGTAAGATTCTAGGTAAATACCAGAGGTGGATTGTCCAGTGGCCCTGCATCCTCTCCCTCATCTTCCTTTTGGGACGATTTCTTTACATGCTGGTTAAAGCTGTTCAAATAGTGGAACAGGAGGACCCTGAAGAGTTGATTGAAAAACACCAGATACAGCATGTTAAGAGACTGCTGAGGAAAACACCTGCACACAGTAAGACCCTCAGCTGGTTCCAGAGCAGAGTGTATGAGTGGGACCCTTACTTCAAGTTTCCCAACAGAATCATCGGCACTGTCATCATATCCCTTATAGGCCTGTATACGTTGACCCTGGTAGACTACAGTCTCAGTAATGTGGCTTTTGACCAAATAGACAGGTGGAAGAATACACTAAAACAGCTGGTTACGTCTTGTAACCAGACTGAAGCTCTCGGAGTCATGATACCACAGCTGGAAGAATTCATCGACGTGGCTCGGAAGTCTTGGCTAGCTACCACCATCTTTTCTACTCTCAACTCTGTAGCCTATTGCTTCCATGTCTTGGCATGTTACAGAAAACACATGAAGAGGCTGTGGAAAGGGCAGAAGGGTTTTCTTCCTGAAAAGTTTCACAACCCTAGATCTGCTGTCAGTGTAGCTTGCATTGCAAGATACTCTGGTTGGCAAATAGCGTTTACACTGTGGGGCTACCTGATTGTCCATTTTATCTACTTCCTGTTTGCTCTGCTGTTGGTCTATATGCTGATTCTTCCTATACAGCATGGAAAAGCACTGATCATGCTCACCAACCTGGGTCTTATACTTCTGACCATCGGTCTAGTCATCGGCCTGGTGATTCTCCAGATAGTTCTGGTTCAGATCTTCTTCCTTCAGGACAAAATGTCTCCCACTGATAAACAAAAACCTTTGGCCCTTAATAACAGGAAGGCGTTCCACTGCTTCAActacttcttctttttctacAACGTGGTGATGGGGATCAGCAACTGCATAATGAGGTTGCTGTGCAGCATTGTAGTGGGAACGTGGCTGGTGTCCCGCTTAGACCGGACCATTATGCAGAGAGGATATGAAACCATAGATGCCGGCTACAGCACTTGGATTGGGATGATCTTTGCTGACCACTATCATAACAATCCAGTCATGGTGTGTTTCTGCCAACTGCTGGTCTCCAACACGCCGGCGAAACACACTGCATCTGCATACTCCACATTCAGCAATGTGTCATCTgAATCCTCTGTGAACAACCGGGTCAGGAGGCGTTGGATGTTGTTTTATACCTTACTGAGGAACCCTCATCTGATCCTGCTCAGAAAGCACCACCTCTCCTCATCTTCATCAGtacacacatcatcatctccCCAGTCACACACACTTGTGCAGGCTTGCTTCATGGCGTCTCAAACACAGAGTCGTCAAGCAGAGTCACAGTCACCACCAGCGATCATAGTCACGCCAGCAGAAGACATTTCCATTGATTGTGATCATGTTAAAAACAATATAGGTTAGAATCCAAAATTGTTTGAGTCGTTTGGCGGTGGATCCCCATGTGGTAGAAGGAGTACTGTGGTGTTTTCAATGTCATTTCAAAATGTTGAGCACCAACATCTGACTGAAAAGATATATTCTAGTTAATGCTCGTCAATAATTAGGTCACCATTCTATCAGCTCAGTAGACATTTCATTTCATCCTTAGAAATGTTCTCATGTTGAATTTGACTTAAAGAAACTGTGAGATCATGTGCCACAAAATGGTTGTATAGGTTGAGTTTAAGGGTTTTAATAAGTGTGTTGTTGTCTGGAATATACAATTGTATTCACTCTTGAGTTCAGAGTGTTTATGCCCTGCCTGTATCTGAATGGTCAGACCAAAACATCTGCTGAAAATGTTTTAACTGCAGTAAAGtctagaccaggggtgtcaaactcaatttcactaagggccacactggaaatgacgatcacaataagggccaaacatgttgagtttattgacatgcttttatttaacaaaa

Function

NR:

description
stimulated by retinoic acid gene 6 protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810678.1 True 2672 mRNA 0.45 18 20033839 20042084

Neighbor

gene id symbol gene type direction distance location
tdrd7a NA coding downstream 1001 20011154 ~ 20032838 (-)
tmod1 tmod1 coding downstream 27178 19985410 ~ 20006661 (-)
gne gne,LOC102781855 coding downstream 101431 19902680 ~ 19932408 (-)
clta clta,LOC106959212,LOC106905474 coding downstream 134400 19888376 ~ 19899439 (-)
nansa nans coding downstream 148188 19879374 ~ 19885651 (-)
LOC120565191 LOC103366463,LOC102211221,LOC102302105,LOC101484083 coding upstream 2881 20044965 ~ 20088639 (-)
LOC120556938 LOC104960150 coding upstream 72722 20114806 ~ 20126605 (-)
LOC120564208 NA coding upstream 140815 20182899 ~ 20186395 (-)
LOC120556991 NA coding upstream 155937 20198021 ~ 20199878 (-)
LOC120565775 sgcz coding upstream 171633 20213717 ~ 20621798 (-)
G6242 NA non-coding downstream 113559 19917116 ~ 19920280 (-)
G6233 NA non-coding downstream 192124 19839154 ~ 19841715 (-)
G6131 NA non-coding downstream 282021 19751601 ~ 19751818 (-)
G6093 NA non-coding downstream 484681 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 537711 19493882 ~ 19496128 (-)
G6264 NA non-coding upstream 139955 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 154194 20196278 ~ 20203695 (-)
G6297 NA non-coding upstream 703064 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 938101 20980185 ~ 20983277 (-)
G6410 NA non-coding upstream 1091426 21133510 ~ 21135891 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 237317 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 268452 19764893 ~ 19765387 (-)
G6084 NA other downstream 487912 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 996758 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 1051521 18971970 ~ 18982318 (-)
spink4 NA other upstream 679 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 145197 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1521007 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1666456 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 2286435 22328519 ~ 22335583 (-)

Expression


Co-expression Network