XLOC_004612


Basic Information

Item Value
gene id XLOC_004612
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16490198 ~ 16491806 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010906
GCATGATTTTACATTTGAGTAATAAAGAGTTTACTTGGAAATTTGgtgaacaaaacaaatgaaaatattaaaatgaactcTTCATAGGCCTGTCACCTTTTAAATCTAAGATTGTTAATAGATTGAATATTCATTGGACATAAATTAAGGGAATTTTACTGGCCACACTGTGGGTGGAAACATAACCAACGCATATAGTACTATGTTCTGACTCCTTATCTGcattaaatgattaaaactatAGGATATCATCTTTAAGACAGGACTTTCTGTTTGAAATTTGTGTAAAATTTTATACTAAACCTAAGAAACAGATGTTACCTTTGGGTTACAAGTTCAACTCACTAACCATTAGGTTACAACTTTCTCTATAGGTGAGCGAAGTGTGTAGACAAACGTTGTTAGACAGTTGTGAGACAGTTAAATGGTGAAGGGAGTGATCCAATAAGCCTATTGATGGAAGCCTTTCAGAACATGCTGTCATCCTTGGTGTGAAAAGTGGTAGAGCGATTCCTGGAGCAGTTTCCTGGCACCCATGCAGAATTGcacatttttctaaaaaaaaaaaaaaaaaagactctaagattttaattaaaaactacattttaaccCTCTCCATCTCTGCTGAAAGAAGCTCAACTTAATGTCTAATTCTACCCATCTTTAAAAAACTTCAACAACACTTGACAGGTAATGATAAGGACTCTTGCTTGACAAACAACATCAAGGACACTGGAATGGCCTctcaaaaaaaatGTAGTAACATCACACAGTTTTGGAAGACAGCACTGTCTTACATCCCAGATTCAAGTCAAAGGTGGCAGATAAAGTGCAGAACAGACTGGAGCACAAGCTGATTACAAGGACCACAGAACAGcctcaagtcaaGCAGATAGAGCTGAAGTTTAAAAAGAGAGCAGCAAATTCGGCAAAATAATAGTTAATCTGATGAAGACTGCATCTGCAGCAACAACACTGAAGAGACCAAAGCTCTCTGCCCTTGAGAAACTGTTGTCGAGGACATGGCAGCTGAAGCAAGAGAAAAAGACACTTGTCCCCAGTATTACAGAGATTTAGACAGAGATAAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:2000145 regulation of cell motility biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0071310 cellular response to organic substance biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0048513 animal organ development biological_process
GO:0003146 heart jogging biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0043049 otic placode formation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0051216 cartilage development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048870 cell motility biological_process
GO:0070887 cellular response to chemical stimulus biological_process
GO:0051270 regulation of cellular component movement biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0040011 locomotion biological_process
GO:0040012 regulation of locomotion biological_process
GO:0021703 locus ceruleus development biological_process
GO:0003002 regionalization biological_process
GO:0009719 response to endogenous stimulus biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0048925 lateral line system development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0071495 cellular response to endogenous stimulus biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0010033 response to organic substance biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0030916 otic vesicle formation biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0005105 type 1 fibroblast growth factor receptor binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010906 True 1088 lncRNA 0.37 5 16490198 16491806

Neighbor

gene id symbol gene type direction distance location
XLOC_004611 NA coding upstream 2631 16486965 ~ 16487567 (+)
XLOC_004610 kif20bb coding upstream 10907 16452575 ~ 16479291 (+)
XLOC_004609 ankrd1b coding upstream 43825 16440708 ~ 16446373 (+)
XLOC_004608 ppp1r3cb coding upstream 201913 16281312 ~ 16288285 (+)
XLOC_004607 mpp3b coding upstream 213922 16233077 ~ 16276276 (+)
XLOC_004613 NA coding downstream 76048 16567854 ~ 16570044 (+)
XLOC_004614 NA coding downstream 91567 16583373 ~ 16585054 (+)
XLOC_004615 NA coding downstream 250589 16742395 ~ 16874703 (+)
XLOC_004616 zgc:174153 coding downstream 457585 16949391 ~ 16951851 (+)
XLOC_004617 pank1b coding downstream 461609 16953415 ~ 16964840 (+)
XLOC_004603 NA non-coding upstream 541647 15948036 ~ 15948551 (+)
XLOC_004602 NA non-coding upstream 564401 15904124 ~ 15925797 (+)
XLOC_004597 CR749751.1 non-coding upstream 1108384 15381694 ~ 15381814 (+)
XLOC_004593 NA non-coding upstream 1374767 15111405 ~ 15115431 (+)
XLOC_004618 dre-mir-107a non-coding downstream 468887 16960693 ~ 16960781 (+)
XLOC_004624 AL731788.1 non-coding downstream 853744 17345550 ~ 17345667 (+)

Expression


Co-expression Network