LOC120565775 (sgcz)


Basic Information

Item Value
gene id LOC120565775
gene name sgcz
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 20213717 ~ 20621798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811797.1
CTGGCGGTTTGCCGCATGGAAGTCGCCCAGGCAAGGCAGAATATCTTCTGTCTGATCTGGACTCTCTCTTCAGTTGCCGACCACTGCACGAGCAGACACAACATCACACTTACATTTAGTGGGATTCAACGGGATATAACGGCATTTATCCGCTGACCGACTGACAGGAGAGTCTAAATCCCGGCTTCATTCCTGCAGTGGGGGAATATTTCTTACTCAgatgtaacaacaaaaaaagacctACCGCATCGTCAAGTGCGCAAAAGCCGCATCTTGAAACATTACACagctattctattctatttctatATTGTTTTCTATTCCCTCGATCCCCTGCTCGGACAAACCGGGAACCGcaggtgggggggtggggggacttCCACGGCATGGAGTCCTGATTTTACCAAGCGACCCACCGGGAGGAATGAAATTGAGAAAACCCGTCGCCGTGGTGGAATATTAACAACCTAATcctaacaacaataacaaatggGATGTTGCAGCAGAGTTTGGGACTCTAGAGAGCATTCCAACTTTATTCGTCTCCGTTTTTAGTCTCATTCCCTCTCATATTCTTCGCCAGTGGGACTTCTATTTTTGTGCCTGATTTTGCAGTACTTCACCCCTCTATCATGGACCGGTCGACGTCTTTGGATATAGAGGCGCTCAAGATGACCCAGGAGCAGTATATCCTTGCGGCACAGCCCAATCCGCTTCACCAGCGGGGGGCGTCGGTATGCGGCACCCAGGTTTACCCAGCAGTGGGAATCTACGGCTGGAGGAAGAGATGCTTGTACTTCTTCatactcctcctcctcgtcaCCATGATCGTCAACCTCGCGCTGACCATCTGGATCCTCAAAGTCATGAACTTCACTCCGGATGGAATGGGGAATCTGCGGGTGACGAAGGAAGGTGTCAGATTGGAGGGAGTGTCCGAATTCTTATTGCCTCTATACGTCAAAGAGATCCAGTCTCGTAGGgACAGTCCATTGATTCTTCAGTCGGACAGAAATGTGACTGTCAATGCTAGGAATGATCAGGGACAACTGACTGGTCAGCTAACCGTggGTTCAGAAATGGTAGAGGCTCAGTGTCAGAGGTTTGAGGTGAGGAGtgcagatggagagagagttCTGTTCTCCGCAGATGAAGAGGAGATCAGCATCGGCACCGAGAAACTTAGAGTCACAGGGAACGAAGGCGTGGTGTTCAGCCATTCTGTAGAGACATCGCATGTAAGGGCAGAACCCTTCCAAGACCTAAAGCTGGAGTCGCCAACTCGGACCCTGACCCTGGAGGCCCCCAGAGGGGTAGAGGTCAATGCTGGAGTGGGAGACTTCACGGCGTCCTGTAGGAAAGACCTTCTCTTGCAGTCCTCAGAAGGAGAGATCTTTCTAGATGCCAACACCATCAGGCTGGGCAACATTCCCCATGGCAGCGCTGTGGACCCCCTGGAGGGAGCGCCAGCAGGTACTACCTACACCAAACAGACTGTGTACGAGCTTTGTGCCTGCGCTAACGGCAAGCTCTACCTGTCCCCGGCTGAGAAAGGCTCTACCTGCCAAACCACCAGTAACTTTTGTCTCTGGAGCTGAAAATGGGAGGTCAACAGACACCCGGGACATATGGACTATTAGAGTTTGAAGCTAATGCTAGCCAACGGACTGAATCAACATGGATTATGGCTTGGTGGGAAGCTAATGCCAGCTAACGTACCGAATCCACATTGATTGTAGCATGGCGAGAAGTTCATGTCTGTTAACCAATCAAATTATATGGATTACAACTGGGCAGGAAGCTAATGTTCGCTAACAAACCACATTAACAAAAGGACTGTGGCTTGGTGTGAAGCTACTGCCAGCTAAAGGACTGAGTCAACATGGACTAGAGCTTGGTGAGAAGCTTTTGCCAGCTCAGCAACCAAATTAATATGGATTGGTCAGTTACTAATGCTAGTCAAGAGGATGAATGACTTGGCAGGAAGAAAAAGCCGAGGTTAGCTGGTGGGTATGATGCTATGACGCTACTCATGGACATCAATGGACAGTCTCACTCTGGCGCTCTCGTTGGCTGTCTTTGCCATTGTTGAATTGCCGCCATGACGTTTTCTGAAAGTCACAAGGATTACATTTTGGGGTTTCCTGAGAATAGCGAACTCCCTTACTGGAAAACTCATGATTTGGTTAGGATGAACAGATACAGTGATGGACTGCAAACGCGCCAGCAGAGACATGGACAAGGACTCAGTTGGCTATTAGTCATCAGTGTGGACTTTGGTTAAGCCTTGCAGgtagttaataaataaatcagacaATGGTTTAGTCTAGTGGGAAGCTAAGGCTAGCTAACGGACCAATCTATACCAGAAAGGccttccccctctccccctctagTCTTTTAACCCAAACGTTGACATGTGACCCTTCTGTATTAATCTGCACCTGATAGTGAATATGCTGGCCGACTCCACTTTTCATAAGATAACTAATGCAATTAATAGTGCTTCAACGTTGCATTCACCAGCTTTTTCCCCCTTATGTTTTAAGATTTTTCACATCTACTTTTATCTTATTTTAGTTCTCTTTTCTGaaatattttttgtgttatcTCTTTGAATCCTGTTGTTTTTCCCTTCAACATCCTTGTAATCCTCATCAGTACCAGATGCAGGGTTTCTCCCCCTCACCACGAAAAGACATGTCTTTTGGTTTCCGTCTCTCTGGAGTCATTCTATCTGGGCATGTGATGCTTTCTCGCCAGACAGAAAGAAATGgaatgaagaaaatgaaaagtGAGTTAAGTCTTACGTTAAATTAAGGCTCAGGTGGATGTTATGGCAGACCGACCATTTTATGGTATAGGGCCAAACCTCCAGTCAGGCAGAGGCACCAGTCGGGCAACAGCCAGACCAATTTTGGTCTTGTTATGGACCATTATGCATCTTCATCCAGCGTTTGTTGTCGGTCCgacttttttccttctttttgcATGACCTTTCTGCTCTTCTTGCTAAGCCCTCTTTCTTCTCTGTCATGTTGGTTTTCTTTGTCGTTGAGAAACGTTTCTGCCGCCACTCTCCTTTTTGTTCTTTCTTCAGCTTATTTTTAATTCAGTATTTTTACCTTCCATTACTCACTTTTTGCCATCCCAAACTCAAGTATCAGGAATAATGCCCCTTTCCTCTCATACTATGCCCCCTTTAAATTTCTGCAACCTAAGCAAGAAAGTCAAAAAGGTCCAAAGTATTGTTTTGGGggttatttttgatatattcaaaaggggggggggggcggagaGATCAGTGTAAATGGCCTCGAGCTGGCTAACCTAGCACCCAACCTCTTTGATGTCTGGAAATCAGTAGATTTGTGTGGCAGAAATCCCCATGGAAGACATAGTGGATGGAATTGGTTGTATGTCTATGAACTCAATTGGATTAAGGCCCTGAGgcgtacttttttttttttttaaacaaagtgaTACACAGGTGCCTTTGCTGCTGTTGGTAAAAGCACATTACTGTCTGAACGTTCACACTACCCTCAGTGGACCATCTGCAAGTGTCTCTggaaaaaactatatatttatcaatctacctatctatctatttcGTTTTCTGTCTTTCCTCCCCTTTTCTCCTGGTTTTGTAGAACTCTCAGTATATCCAGCTGAAAAAAGAACAATTCAATCCTggtttaaagtttaattttcTGGTGTGTTACCTTATGGTTTTAttcttgataataaaaaaagcacaaattATGCCATGTATATAAC
>XM_039811802.1
CGCAGAAGAGTAGCTGATGGTGAAGGGTAACACTGCTGTACTGGATGACCCAGGAGCAGTATATCCTTGCGGCACAGCCCAATCCGCTTCACCAGCGGGGGGCGTCGGTATGCGGCACCCAGGTTTACCCAGCAGTGGGAATCTACGGCTGGAGGAAGAGATGCTTGTACTTCTTCatactcctcctcctcgtcaCCATGATCGTCAACCTCGCGCTGACCATCTGGATCCTCAAAGTCATGAACTTCACTCCGGATGGAATGGGGAATCTGCGGGTGACGAAGGAAGGTGTCAGATTGGAGGGAGTGTCCGAATTCTTATTGCCTCTATACGTCAAAGAGATCCAGTCTCGTAGGgACAGTCCATTGATTCTTCAGTCGGACAGAAATGTGACTGTCAATGCTAGGAATGATCAGGGACAACTGACTGGTCAGCTAACCGTggGTTCAGAAATGGTAGAGGCTCAGTGTCAGAGGTTTGAGGTGAGGAGtgcagatggagagagagttCTGTTCTCCGCAGATGAAGAGGAGATCAGCATCGGCACCGAGAAACTTAGAGTCACAGGGAACGAAGGCGTGGTGTTCAGCCATTCTGTAGAGACATCGCATGTAAGGGCAGAACCCTTCCAAGACCTAAAGCTGGAGTCGCCAACTCGGACCCTGACCCTGGAGGCCCCCAGAGGGGTAGAGGTCAATGCTGGAGTGGGAGACTTCACGGCGTCCTGTAGGAAAGACCTTCTCTTGCAGTCCTCAGAAGGAGAGATCTTTCTAGATGCCAACACCATCAGGCTGGGCAACATTCCCCATGGCAGCGCTGTGGACCCCCTGGAGGGAGCGCCAGCAGGTACTACCTACACCAAACAGACTGTGTACGAGCTTTGTGCCTGCGCTAACGGCAAGCTCTACCTGTCCCCGGCTGAGAAAGGCTCTACCTGCCAAACCACCAGTAACTTTTGTCTCTGGAGCTGAAAATGGGAGGTCAACAGACACCCGGGACATATGGACTATTAGAGTTTGAAGCTAATGCTAGCCAACGGACTGAATCAACATGGATTATGGCTTGGTGGGAAGCTAATGCCAGCTAACGTACCGAATCCACATTGATTGTAGCATGGCGAGAAGTTCATGTCTGTTAACCAATCAAATTATATGGATTACAACTGGGCAGGAAGCTAATGTTCGCTAACAAACCACATTAACAAAAGGACTGTGGCTTGGTGTGAAGCTACTGCCAGCTAAAGGACTGAGTCAACATGGACTAGAGCTTGGTGAGAAGCTTTTGCCAGCTCAGCAACCAAATTAATATGGATTGGTCAGTTACTAATGCTAGTCAAGAGGATGAATGACTTGGCAGGAAGAAAAAGCCGAGGTTAGCTGGTGGGTATGATGCTATGACGCTACTCATGGACATCAATGGACAGTCTCACTCTGGCGCTCTCGTTGGCTGTCTTTGCCATTGTTGAATTGCCGCCATGACGTTTTCTGAAAGTCACAAGGATTACATTTTGGGGTTTCCTGAGAATAGCGAACTCCCTTACTGGAAAACTCATGATTTGGTTAGGATGAACAGATACAGTGATGGACTGCAAACGCGCCAGCAGAGACATGGACAAGGACTCAGTTGGCTATTAGTCATCAGTGTGGACTTTGGTTAAGCCTTGCAGgtagttaataaataaatcagacaATGGTTTAGTCTAGTGGGAAGCTAAGGCTAGCTAACGGACCAATCTATACCAGAAAGGccttccccctctccccctctagTCTTTTAACCCAAACGTTGACATGTGACCCTTCTGTATTAATCTGCACCTGATAGTGAATATGCTGGCCGACTCCACTTTTCATAAGATAACTAATGCAATTAATAGTGCTTCAACGTTGCATTCACCAGCTTTTTCCCCCTTATGTTTTAAGATTTTTCACATCTACTTTTATCTTATTTTAGTTCTCTTTTCTGaaatattttttgtgttatcTCTTTGAATCCTGTTGTTTTTCCCTTCAACATCCTTGTAATCCTCATCAGTACCAGATGCAGGGTTTCTCCCCCTCACCACGAAAAGACATGTCTTTTGGTTTCCGTCTCTCTGGAGTCATTCTATCTGGGCATGTGATGCTTTCTCGCCAGACAGAAAGAAATGgaatgaagaaaatgaaaagtGAGTTAAGTCTTACGTTAAATTAAGGCTCAGGTGGATGTTATGGCAGACCGACCATTTTATGGTATAGGGCCAAACCTCCAGTCAGGCAGAGGCACCAGTCGGGCAACAGCCAGACCAATTTTGGTCTTGTTATGGACCATTATGCATCTTCATCCAGCGTTTGTTGTCGGTCCgacttttttccttctttttgcATGACCTTTCTGCTCTTCTTGCTAAGCCCTCTTTCTTCTCTGTCATGTTGGTTTTCTTTGTCGTTGAGAAACGTTTCTGCCGCCACTCTCCTTTTTGTTCTTTCTTCAGCTTATTTTTAATTCAGTATTTTTACCTTCCATTACTCACTTTTTGCCATCCCAAACTCAAGTATCAGGAATAATGCCCCTTTCCTCTCATACTATGCCCCCTTTAAATTTCTGCAACCTAAGCAAGAAAGTCAAAAAGGTCCAAAGTATTGTTTTGGGggttatttttgatatattcaaaaggggggggggggcggagaGATCAGTGTAAATGGCCTCGAGCTGGCTAACCTAGCACCCAACCTCTTTGATGTCTGGAAATCAGTAGATTTGTGTGGCAGAAATCCCCATGGAAGACATAGTGGATGGAATTGGTTGTATGTCTATGAACTCAATTGGATTAAGGCCCTGAGgcgtacttttttttttttttaaacaaagtgaTACACAGGTGCCTTTGCTGCTGTTGGTAAAAGCACATTACTGTCTGAACGTTCACACTACCCTCAGTGGACCATCTGCAAGTGTCTCTggaaaaaactatatatttatcaatctacctatctatctatttcGTTTTCTGTCTTTCCTCCCCTTTTCTCCTGGTTTTGTAGAACTCTCAGTATATCCAGCTGAAAAAAGAACAATTCAATCCTggtttaaagtttaattttcTGGTGTGTTACCTTATGGTTTTAttcttgataataaaaaaagcacaaattATGCCATGTATATAAC

Function

symbol description
sgcz Predicted to be involved in cardiac muscle tissue development and heart contraction. Predicted to be located in plasma membrane. Predicted to be part of sarcoglycan complex. Predicted to be active in sarcolemma.

NR:

description
PREDICTED: zeta-sarcoglycan isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811797.1 True 3780 mRNA 0.46 8 20213717 20621798
XM_039811802.1 False 3153 mRNA 0.45 8 20213717 20620976

Neighbor

gene id symbol gene type direction distance location
LOC120556991 NA coding downstream 13839 20198021 ~ 20199878 (-)
LOC120564208 NA coding downstream 27322 20182899 ~ 20186395 (-)
LOC120556938 LOC104960150 coding downstream 87112 20114806 ~ 20126605 (-)
LOC120565191 LOC103366463,LOC102211221,LOC102302105,LOC101484083 coding downstream 125078 20044965 ~ 20088639 (-)
stra6l LOC104958947 coding downstream 171633 20033839 ~ 20042084 (-)
tppp2 LOC103374906,LOC101485391,LOC102784423 coding upstream 200699 20822497 ~ 20827923 (-)
LOC120571719 NA coding upstream 220283 20842081 ~ 20845093 (-)
LOC120557145 NA coding upstream 224926 20846724 ~ 20847666 (-)
LOC120557739 pitpnc1 coding upstream 250022 20871820 ~ 20968107 (-)
LOC120552602 cacng1,LOC106534954 coding upstream 437650 21059448 ~ 21073939 (-)
G6269 NA non-coding downstream 10022 20196278 ~ 20203695 (-)
G6264 NA non-coding downstream 31423 20182039 ~ 20182294 (-)
G6242 NA non-coding downstream 293437 19917116 ~ 19920280 (-)
G6233 NA non-coding downstream 372002 19839154 ~ 19841715 (-)
G6131 NA non-coding downstream 461899 19751601 ~ 19751818 (-)
G6297 NA non-coding upstream 123350 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 358387 20980185 ~ 20983277 (-)
G6410 NA non-coding upstream 511712 21133510 ~ 21135891 (-)
G6471 NA non-coding upstream 698220 21320018 ~ 21320682 (-)
G6483 bptf non-coding upstream 736800 21358598 ~ 21362121 (-)
LOC120574674 NA other downstream 20379 20187281 ~ 20193338 (-)
spink4 NA other downstream 168991 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 417195 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 448330 19764893 ~ 19765387 (-)
G6084 NA other downstream 667790 19489588 ~ 19545927 (-)
LOC120566957 NA other upstream 941293 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1086742 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 1706721 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 2043577 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 2360127 22981925 ~ 22988500 (-)

Expression


Co-expression Network