mrps28 (mrps28)


Basic Information

Item Value
gene id mrps28
gene name mrps28
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2266855 ~ 2267623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812339.1
AGTTCTCCTGTCTTCTCTACCGGATGTGCTGCTCTCCTAGGTGTTGTGACAACATGGCGGCCCTGTGGAAGGTTGTGTCCAGCGTCAGGACGTGTGGAGCCCGTCTCCCCGCCGACAGGTTCTCCAGGATCTCCTCTTCCTTCAGCTCGGATTCCGGCAGCGACCAGAGACCCAGAACCGGCGGCTTCGCTTCCGCCTTCAACCAGCAGTCGGAGCTCCGGCGTCGGCGGGAGGCGGAGAGCTCCGTGGCCGgcggcagcgtctcttcccccgggCAGGAGCACAGCttcgcctcgctgctgcgccggtccccgctgatccagatgggaccggccaaagacagagtggtgatcgggaggatcttccacgtagtccaggacgacctgtacgTGGATTTCGGCGGGAAGTTCCACTGCGTTTGCCGGCGGCCGGCCGATGGAGAGAAGCTGCAGCGGGGCAGCAgggtccgtctgcggctgcaggatctggagctcactgcccgcttcctgggggccaaaaccgacaccacgctgctGGAGGCTCAGGCCGTgctgctgggcccgctggagggaagggatgCCCGggagaaccagaaccaggactGAGCGGGGCGGACTGTTACAGCCTGCTCAAGCTTCAATCACATGTTTCCCAAAGGGAGTCTGGcaggactcggactgtggacgaggaaattaatgaatgaatgaatagtggaggagtgagcctggacattaagtctgtttttgttcttttttagttCAGAAGAAGT

Function

symbol description
mrps28 Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 47. Orthologous to human MRPS28 (mitochondrial ribosomal protein S28).

NR:

description
PREDICTED: 28S ribosomal protein S28, mitochondrial

GO: NA

KEGG:

id description
K17407 MRPS28; small subunit ribosomal protein S28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812339.1 True 769 mRNA 0.61 1 2266855 2267623

Neighbor

gene id symbol gene type direction distance location
mtif2 mtif2 coding upstream 19921 2228163 ~ 2246934 (+)
LOC120566049 NA coding upstream 47002 2211994 ~ 2219853 (+)
LOC120566037 NA coding upstream 61955 2202527 ~ 2204900 (+)
LOC120561330 NA coding upstream 65455 2197974 ~ 2201400 (+)
LOC120561285 NA coding upstream 81279 2137077 ~ 2185576 (+)
LOC120561353 LOC102083160 coding downstream 95109 2362732 ~ 2394287 (+)
LOC120566159 NA coding downstream 305357 2572980 ~ 2584262 (+)
LOC120561808 srf,LOC103372093 coding downstream 590881 2858504 ~ 2881120 (+)
eif4a3 eif4a3 coding downstream 615300 2882923 ~ 2891005 (+)
tmem178 tmem178a,LOC102307988 coding downstream 670474 2938097 ~ 2977429 (+)
G701 NA non-coding upstream 12521 2252046 ~ 2254334 (+)
G690 NA non-coding upstream 94385 2170948 ~ 2172470 (+)
G684 NA non-coding upstream 136071 2130256 ~ 2130784 (+)
G676 NA non-coding upstream 137439 2082828 ~ 2129416 (+)
G675 NA non-coding upstream 160118 2067832 ~ 2106737 (+)
G720 NA non-coding downstream 57493 2325116 ~ 2380150 (+)
G725 NA non-coding downstream 79545 2347168 ~ 2361839 (+)
G724 NA non-coding downstream 87311 2354934 ~ 2361333 (+)
G731 NA non-coding downstream 117532 2385155 ~ 2385544 (+)
G857 NA non-coding downstream 303669 2571292 ~ 2571500 (+)
LOC120566000 NA other upstream 299600 1946145 ~ 1967255 (+)
G369 NA other upstream 347031 1582038 ~ 1919824 (+)
G363 LOC104946033,LOC104961227 other upstream 387309 1593822 ~ 1879546 (+)
LOC120566853 snrpb2,LOC102212107,LOC102301910,LOC101474810 other upstream 430395 1746571 ~ 1836460 (+)
G355 NA other upstream 730158 1536215 ~ 1536697 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other downstream 39662 2307285 ~ 2346048 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other downstream 291253 2558876 ~ 2570454 (+)
G879 NA other downstream 358620 2626243 ~ 2700975 (+)
LOC120567073 sos1 other downstream 727406 2995029 ~ 3080190 (+)
LOC120567079 NA other downstream 800775 3068398 ~ 3071473 (+)

Expression


Co-expression Network