LOC120566106 (LOC105920176,LOC103375176,LOC108251144)


Basic Information

Item Value
gene id LOC120566106
gene name LOC105920176,LOC103375176,LOC108251144
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2303564 ~ 2345270 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812374.1
TATCAGGGCGGAGGTCTGTAACTCTGTGACGGTGTTTGACAGTTCCTCTCCGAGAGGAAAAGTTCTGCGGACTGATTTGAACTTTTCTCctccgtcttcttcttcttctgcgcTATAATGTCCGGCGTGGCGTCCACTCTGGCCAAGAAGCGGGCTCTGGCCGCGGGCTTCGGAACCAACGCCAACGCGGTCCCTTACCTGAACCAGAACTTCGCGGCTCTGCGCGCGCAATGCTGCGCGGAGGGTCGACTCTTCTGCGACCCGACTTTCCCCGCCGAGCCCGAGGCTCTGGGCTTCAAAGATCTGGGCCGGAGCTCCCCGAAGGTCCGCGGAGTCACCTGGAAGAGACCCAAGGAACTGGTCTCTAATCCTGAGTTCATCTTGGGCGGAGCCACCAGGACCGATATCTGCCAGGGAGCTCTGGgtgaCTGCTGGCTGTTGGCGGCCATCGCCTCGCTGACCCTGAACGAGTACGTGATGGCCCGAGTCGTTCCCACCGACCAGGGCTTTGGGAACGACTACGCCGGCATCTTCCACTTCCAGttcTGGCAGTTTGGGGAGTGGGTGGACGTGGTGATTGACGACCGTCTGCCGGTTAAAGATGGAGAGTTGCTGTTCGTCCACTCGGCCGAGGGGAGGGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGGTGAACGGCTGCTACGAGGCGCTGTCCGGCGGCTCCACCACCGAGGGCTTCGAGGATTTCACCGGCGGCATCGCCGAGAACTACGACCTCCAGCGGCCGCCCGCCAACCTGTTCCAGATCATAAAGAAAGCTCTGGAGGCCGGAGCGCTGCTGGGCTGCTCCATCGACATCACCAGCGCGGCCGACTCGGAGGCCGTCACCCGGCAGAAGCTGGTGAAAGGCCACGCCTACTCACTGACCGGCGCCGTCGagGTGAACTACCGCGGCCGTCAGGAGAAACTGGTCCGGGTCAGAAACCCCTGGGGACAGGTGGAGTGGACCGGGGCCTGGAGTGatggGTCCCCTGAGTGGCAGTCGGTGCAGGGAGACTGTCCCCACGCCAAGGCCGAGGACGGAGAGTTCTGGATGTCCTACACTGATTTCCTGCGTAACTACTCCCGTATCGAGGTGTGCACGCTGACCCCCGACACCATCGACGACGACTCGGTCAAACACTGGAGCGTCAGCAAGTTCGACGGCACGTGGAGGAAAGGCTCGACCGCCGGAGGCTGCAGGAACCATCCCTACACGTTCTGGATGAATCCCCAGTTTGTGATCAAGCTGGACGAGGAGGACGATGACCCCGAGGACGGGGAGGTGGGCTGCAGCTTCGTGGTCGGTCTGATCCAGAAGAACCGCAGGAAGCTGCGGAAAGTAGGAGAGGACATGCACACCGTGGGGTTCGCCATCTACGAGGTTCCTAAACAGTTCTATGGGCAGCGGGACGTGCACCTGGATAAGAACTTCTTCCTGAGCCACGCCCAGACCGCCAAGTCTGAGACCTTCATCAACCTGCGGGAGGTCAGCACTCGCTTCAAGCTGCCGCCCGGAGAGTACCTGATCGTCCCCTCCACCTTCGACCCCCACCTCAACGGAGACTTCTGCATCCGCGTCTTCTCCGAGAAGCAGACAGAGACCCTGCCCTGTGATGACCCGGTCAACGCTGAGCTGGACGACGAGACGGTGTCTGACTCGGAGGTGGACGCAGGATTCAGAGGACTCTTTTCCAAACTCGCCGGGCCTGACATGGAGATCTCTGCGGTGGAGCTCCAGACCATCATGAACAAGATCGTTTCCAAACGAACGGACATTAAGACAGACGGCTTCAGCTTGGAGACGTGCCGGGTCATGGTGAACCTGATGGACGACAGCGGCAACGGCAAGCTGGGCATCGGAGAGTTCGCCACGCTGTGGAAGAAAGTTCAGACATATCTGacccTCTACAAGAAGAATGACCTAGATAACTCGGGGACCATGAGTACTCCTGAGATGAGAGTCGCCTTCAAAGACGCAGGTTTCACCCTCAACAACAGCATCTACCAGCTGCTGGTGGCCCGGTACTCCGAGCCAGACATGACCATCGACTTTGATAACTTTGTGGGCTGCTTGATGAGACTGGAGATGATGTTCaGGATCTTTAAGAAGCTCGATGCCCACAACAGCGGCTCCATCGAGCTCGACTTCAACCAGtggaTAAACTTCTCCATGATCTGAGCCCTGGACCtgagccgagccgagccgagccgtGTGCTGACGGTCCTGCAGCGAGCCATATTATCCCCTTGTACTGCTGCAGCTCCACTTCGTGTTTATATCCAAacactacctgtctgtctccgtAACATAACGTCAATAAAGTTTCCAGAAACCTCCAA

Function

NR:

description
calpain-2 catalytic subunit

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812374.1 True 2372 mRNA 0.59 21 2303564 2345270

Neighbor

gene id symbol gene type direction distance location
LOC120566094 LOC103375177,LOC102205209,LOC101467885,LOC100705917 coding downstream 978 2271460 ~ 2302586 (-)
sde2 NA coding downstream 37211 2252052 ~ 2266353 (-)
LOC120566031 NA coding downstream 168043 2128573 ~ 2135521 (-)
LOC120566021 NA coding downstream 197063 2097369 ~ 2106501 (-)
LOC120560873 LOC104946033 coding downstream 674405 1625530 ~ 1629159 (-)
LOC120566112 NA coding upstream 49365 2394635 ~ 2431448 (-)
LOC120566128 NA coding upstream 114622 2459892 ~ 2489631 (-)
LOC120561571 NA coding upstream 198623 2543893 ~ 2549849 (-)
aars2 aars2 coding upstream 248265 2593535 ~ 2625954 (-)
zgc:110222 LOC103372080,LOC100694267 coding upstream 344707 2689977 ~ 2693643 (-)
G807 NA non-coding downstream 40404 2261027 ~ 2263160 (-)
G809 NA non-coding downstream 41007 2261720 ~ 2262557 (-)
G808 NA non-coding downstream 47987 2254816 ~ 2255577 (-)
G799 NA non-coding downstream 62969 2239863 ~ 2240595 (-)
LOC120566044 NA non-coding downstream 92733 2210411 ~ 2210831 (-)
G831 NA non-coding upstream 104596 2449866 ~ 2450775 (-)
G856 NA non-coding upstream 224720 2569990 ~ 2571186 (-)
G861 NA non-coding upstream 232842 2578112 ~ 2584242 (-)
LOC120566195 NA non-coding upstream 283063 2628333 ~ 2694721 (-)
G895 NA non-coding upstream 338923 2684193 ~ 2684601 (-)
G670 LOC103370005,LOC106529077 other downstream 253180 2049069 ~ 2050384 (-)
LOC120566421 NA other downstream 553872 1733546 ~ 1749692 (-)
stab2 NA other downstream 727069 1470417 ~ 1576495 (-)
G565 LOC105912973,LOC105893694,LOC105900140,LOC105893089 other downstream 943091 1359664 ~ 1360473 (-)
G519 NA other downstream 1328737 966236 ~ 974827 (-)
G974 NA other upstream 513226 2858496 ~ 2859302 (-)
G1003 tmem178a other upstream 618470 2963740 ~ 2964320 (-)
G1008 tmem178a,LOC102307988 other upstream 629968 2975238 ~ 2978115 (-)
LOC120550954 NA other upstream 887354 3232624 ~ 3241497 (-)
LOC120550734 LOC106675350 other upstream 924252 3269522 ~ 3274443 (-)

Expression


Co-expression Network