LOC120566383


Basic Information

Item Value
gene id LOC120566383
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1138078 ~ 1171265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812780.1
GTGaacacagacagcagcagcatctgtCAGAGTCTGCTGATGAAGGTACCACGTCTCTTTGACCTCATCTGAACGGGACTTTAACAGCGGAGCAGCCTGACAGttttctttcagtttgacaAAACTTTCTGATTTTAGCAGGAAGCCACGATGACGGCAGTGAACCTTTTCAACACTTTGGAGGATTTAAAAGAAGAGGAATTTAAGAAATTCAAATGGTGTCTGCAGCAAGACATCCTGGAAGGCTACCAAAGCATCAAAGTGGCCAAGTTGGAGAATGCAGAAAGGCAGGACACGGTGGACGTGATGGTGAAAACCTATCAACTTCACGGAGCTCTGAAGGTGACCAAGAAGGTTTTAGAGAAGATCAACAGGAATGATCTGGTGCAGAGTCTGCCAGACACCAGCTCAGGACCAGAAGATATGGCTGCTGCAAACTACCTACAATctgaagatcagtttctgtgctcgatctgtctggatgtgttcacGGATCCTGTCAGCACACCATGTGGACACAACTTCTGCAAGAATTGCATCACTGAACACTGGAATACTAGTAACAGGTGCCTTTGTCCCCTGTGTAAGGAGGGTTTTACCACAATACCTGATTTGAGGGTCAACACTTTCATCTCTGAGATGGTCGCTCAcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtcTCCTACTGTGAGACTCACTTGGAGCCTCATCTGACCATGTCAGGCCTTaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATTTGTACAAAGCATGATAAACCTCTGGAGCTCTTCTGTAATCCTCTTTCtACCGACCAGACATGTGTCTGCATACTCTGCAATGTTTTAGATCACAAGAAGCATGATGTTGTTCCTCTGAAAGAAGAATATGAAAGAAAGAAGGCAGAGGTGAAATTCAccagtgatccagaagagatGACAAAGATTCAGGAGATCAAAAACTCAGTTGAcctcagtgaggaagatgcagacagagagatagcagaaggtgttcaggtcttcacttctctgaaggagtctgttgagagaggcctgaatgaactcatcaacacgatcaaagagaagcagaaaacaacagaaaaacaggccgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagagaagcactgaggtggagcagGTGTTACGCTCTGAAGaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAACAACCTCCACCCACCAACTACTGGACAGAAGTCAGCGTCCATCCATCATCATATGAGGGGACTGTGGTGAAAGCTGTGGCtcagctggaggagacactCTGTAAAGAGATGAAGAAGTGGCTCGCTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcaTCTCCTTatctcatcctgtctgatgatGGGAAACAAGTGAATCTTGGTGATGTAGAGAAGAATCTCCCAGACAACCCAGAGAGATTTTCTAAGTGTGTTAATGTTTTAGGAAAGCAGAGTGTCTCTTCAGACAGATTTTACTTTGAGGTTCAAGTTAAAGAAGATTGGGATTTAGGAGTGGCCAGAGAGTCGATCAACAGGAAGGAAGACATCACACTGAGTCCTCAGAAAGGTTACTGGACTATATGGTTGAGAAATACAAATGACTACAAAGCTAATGATTCTCCTCCCGTCCTTCTCTCTTTGAAGTCTCCTcctcagaaggtgggggtgtttgtggattatgaggagggtctAGTCTCCTTTTTTGACGTagatgctgcagctcttatctactcctttactggctgctccttcactgagaaactcttcccATTCTTCAGTCCTGGTCTTAATGATGGTGGTAAAAACTCTGCccctctgatcatctctcctgtcagagTAAACTAATCACTGATCTCATTTCaggtattgatttatt

Function

GO: NA

KEGG:

id description
K10651 TRIM21, SSA1; tripartite motif-containing protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812780.1 True 2053 mRNA 0.46 7 1138078 1171265

Neighbor

gene id symbol gene type direction distance location
LOC120566319 NA coding upstream 12341 622380 ~ 1125737 (+)
LOC120566475 NA coding upstream 34549 1093019 ~ 1103529 (+)
LOC120566725 NA coding upstream 65437 1066698 ~ 1072641 (+)
LOC120566581 NA coding upstream 153492 973805 ~ 984586 (+)
LOC120566870 NA coding upstream 279545 840662 ~ 858533 (+)
LOC120560623 LOC104959125,LOC102294989,LOC102198497,LOC101481490 coding downstream 35653 1206918 ~ 1215606 (+)
LOC120566607 NA coding downstream 56093 1227358 ~ 1235973 (+)
LOC120566570 NA coding downstream 81503 1252768 ~ 1258104 (+)
LOC120566489 NA coding downstream 88754 1260019 ~ 1267265 (+)
LOC120566495 NA coding downstream 170359 1341624 ~ 1347194 (+)
G281 NA non-coding upstream 169558 967330 ~ 968520 (+)
LOC120566926 NA non-coding upstream 245955 891621 ~ 892123 (+)
G270 LOC103372508 non-coding upstream 326131 808561 ~ 811947 (+)
G261 NA non-coding upstream 445849 686445 ~ 692229 (+)
G221 NA non-coding upstream 615089 522532 ~ 522989 (+)
LOC120566887 NA non-coding downstream 131448 1302713 ~ 1303535 (+)
G309 NA non-coding downstream 180255 1351520 ~ 1352050 (+)
G310 NA non-coding downstream 182871 1354136 ~ 1354378 (+)
G321 LOC106675347,LOC106676307,LOC106676577,LOC107663003,LOC107395936,LOC107379945 non-coding downstream 211865 1383130 ~ 1383452 (+)
G322 NA non-coding downstream 213192 1384457 ~ 1384658 (+)
G199 NA other upstream 119040 1016907 ~ 1019038 (+)
LOC120566368 NA other upstream 125209 907840 ~ 1012869 (+)
LOC120566414 LOC104946033 other upstream 126463 926306 ~ 1011615 (+)
LOC120566394 NA other upstream 384316 708153 ~ 753762 (+)
G176 LOC104946033 other upstream 539871 583390 ~ 598207 (+)
G151 NA other downstream 22396 1193661 ~ 1219085 (+)
G149 LOC104959125,LOC105030654 other downstream 140602 1311867 ~ 1312431 (+)
G355 NA other downstream 364950 1536215 ~ 1536697 (+)
G369 NA other downstream 410773 1582038 ~ 1919824 (+)
G363 LOC104946033,LOC104961227 other downstream 422557 1593822 ~ 1879546 (+)

Expression


Co-expression Network