XLOC_004613


Basic Information

Item Value
gene id XLOC_004613
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16567854 ~ 16570044 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010907
CTCGCCTTCTTCTGTGGATGTCCCTCTTTGCCTATAGATGCACATACAGCTGTTTAAGGATTTCAGTCTGAAGAAAAACTATACACAGCTTACGAAGACTAGCACCGTGCCAACCAGAAGCTGTCCACATCCATTCGCTGGAATCGGTCTTTGTCAGGTGACGTCACCCTCGTAAACAccgaactgcattatgggacaaAGCCACCATTTGTGTTGTATCCGAGTTAACATGAGCTGTTATATGGCTTTAGCGTCTTTCGCAGAGTAAATACAGCGTTACGATAGTGTTGTATTAAGGGCTGTAATAGTAAATCACATGATCGAAAGGGTACAAAATAATCACGACGAAAGATATTTAAAACTTTCCACTGGGTAGAAAGGATATTGACAGATTGTTGCGGTTACAACAGACGCATCGGGCGTCCTAGGCTGCTGCATTGAGACGCAGAATATATCGTCATTTCTCCGTTTATGCTCTCAACATTATCACAAAGCTTTGTCATTGCCAGCCAAGCTGCATATGAGATGATGGAGACTGACCCAGACTGAGCAGCATGTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTGTACACTCTGCAAGACAGATTAAGAGGAGGGAAAGAAAACCAACACTGCATTCAGCTAAAGATGTGGACGAACAACATGCTGAGAAGGAGACATTTGAGGTTGAAATTAGTGAGAGACACTGATGAGGAGACACACAACACCAAGGAGGTAGCTGAGGCAAACTGAATGTAAATTGTGCATGGACAAGTGTAGAAGAACTTGAAGAATACATGATGTCTGATGGATTTTGTAGCAAGAATGAAGCTAAAGtaccaaatattaaaaaaataaataaaaaaataaataaaaaataaaatcttaataacAAGCACTGAGCCATAAACGTGATAGTCCCTTGTGAGGTGAAGATGTCGCATTACAGCATAGGATTGTAACTGTCAAACAAACCAGCGTTCAACTGTAGTGTAGTAGAGCTGTAGTTGCCAATAAGAGTTAAAAGCCTAGGTGTATAAATGCATTCTGTGCTTAattgatacattatttaaaaaaatcctttacatttttgttactttgtttctttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGTGAACAATATGATGCATTTCTCCAGAAATGACTTTTCCCTTAGTGCcttaataaaaatgtcatttgtttaaatgtaaataaatggaggatgacttaaaatgtgtttttactcatttattttttatgttcttcACAATAACAAAACTGGTACATCCAAACCAAACACAGGGTAGGCAAATAGTTAGAACCAAATAATTCACCCACAAATTTAAAGTGACTATTTACCTGCCATCAAGTGATTCTAAacctttgagtttattttttttaatctttacacTAATAAAGATATCatgaaaaaatgctgaaaatctgtAGTAGG
>TCONS_00010908
ATTTCTCCGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGAGATGATGGAGACTGACCCAGACTGAGCAGCATGTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTGTACACTCTGCAAGACAGATTAAGAGGAGGGAAAGAAAACCAACACTGCATTCAGCTAAAGATGTGGACGAACAACATGCTGAGAAGGAGACATTTGAGGTTGAAATTAGTGAGAGACACTGATGAGGAGACACACAACACCAAGGAGGTAGCTGAGGCAAACTGAATGTAAATTGTGCATGGACAAGTGTAGAAGAACTTGAAGAATACATGATGTCTGATGGATTTTGTAGCAAGAATGAAGCTAAAGtaccaaatattaaaaaaataaataaaaaaataaataaaaaataaaatcttaataacAAGCACTGAGCCATAAACGTGATAGTCCCTTGTGAGGTGAAGATGTCGCATTACAGCATAGGATTGTAACTGTCAAACAAACCAGCGTTCAACTGTAGTGTAGTAGAGCTGTAGTTGCCAATAAGAGTTAAAAGCCTAGGTGTATAAATGCATTCTGTGCTTAattgatacattatttaaaaaaatcctttacatttttgttactttgtttctttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGTGAACAATATGATGCATTTCTCCAGAAATGACTTTTCCCTTAGTGCcttaataaaaatgtcatttgtttaaatgtaaataaatggaggatgacttaaaatgtgtttttactcatttattttttatgttcttcACAATAACAAAACTGGTACATCCAAACCAAACACAGGGTAGGCAAATAGTTAGAACCAAATAATTCACCCACAAATTTAAAGTGACTATTTACCTGCCATCAAGTGATTCTAAacctttgagtttattttttttaatctttacacTAATAAAGATATCatgaaaaaatgctgaaaatctgtAGTAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010907 False 1484 lncRNA 0.38 3 16567854 16570044
TCONS_00010908 True 1010 lncRNA 0.35 2 16568492 16570044

Neighbor

gene id symbol gene type direction distance location
XLOC_004612 NA coding upstream 76048 16490198 ~ 16491806 (+)
XLOC_004611 NA coding upstream 80287 16486965 ~ 16487567 (+)
XLOC_004610 kif20bb coding upstream 88563 16452575 ~ 16479291 (+)
XLOC_004609 ankrd1b coding upstream 121481 16440708 ~ 16446373 (+)
XLOC_004608 ppp1r3cb coding upstream 279569 16281312 ~ 16288285 (+)
XLOC_004614 NA coding downstream 13329 16583373 ~ 16585054 (+)
XLOC_004615 NA coding downstream 172351 16742395 ~ 16874703 (+)
XLOC_004616 zgc:174153 coding downstream 379347 16949391 ~ 16951851 (+)
XLOC_004617 pank1b coding downstream 383371 16953415 ~ 16964840 (+)
XLOC_004618 dre-mir-107a coding downstream 390649 16960693 ~ 16960781 (+)
XLOC_004603 NA non-coding upstream 619303 15948036 ~ 15948551 (+)
XLOC_004602 NA non-coding upstream 642057 15904124 ~ 15925797 (+)
XLOC_004597 CR749751.1 non-coding upstream 1186040 15381694 ~ 15381814 (+)
XLOC_004624 AL731788.1 non-coding downstream 775506 17345550 ~ 17345667 (+)
XLOC_004625 NA non-coding downstream 854387 17424431 ~ 17427380 (+)

Expression


Co-expression Network