LOC120566690 (ddx17,LOC105012177)


Basic Information

Item Value
gene id LOC120566690
gene name ddx17,LOC105012177
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35984246 ~ 35993088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813314.1
AAGGGCAGGGGGGGAAGGTGCGAAGCGGTTGTTTTGCTGCGTCTTGACGGTCGTGACGCATTCAACAATTGTTTACCGTTTCCGAATTTGAACGTAATTATCGTCTAACATACATAGTTTTTCAAGCGTAAATTGCGTATATTTTGCTTTTGCGAATTTTAACATTGCACAGAGTAAACACGCCGGTGTCAAACGTTAAAGCTTAGCTAGGTTACAGATACTGCGGAGGGAACGTTAACTTTTGTTTCGCCAACATGAGAGGGGGTTCTTCTTtcggagacagagacaggggcCGTGGACGAGACAGGCCACAGTTTGGGTCCATGGGCGGTCGCGGTGGACCCCCACCAATGAAGTTTGGGAATCCAGGTGAGCGTCTCCGCAAGAAGAAGTGGAACCTGGACGAGCTGCCAAAATTTGAGAAGAACTTCTACACTGAACACCCTGAGCTCCAACACAAGAGTCAGtatgaaaTGGAAGAGTATTGCAAAAAGAAGGAGATCACCATCAGAGGCACTGGCTGTCCAAAAGCGATCACTGCTTTTCACCAGGCGCAGTTTCCTCAGTATGTGATGGATGTTCTGATGCAGCAGAACTTCAAGGAGCCAACAGCGATCCAGTCCCAGGGCTTCCCTGTGGCCCTGAGCGGCAGGGACATGGTGGGGATCGCACAGACTGGCTCCGGAAAGACACTGGCTTATCTTCTTCCTGCTATTGTACACATCAACCACCAGCCTTATCTGGAGAGGGGAGATGGCCCAGTTTGTCTGGTGGTTGCCCCAACCAGAGAGCTGGCTCAGCAGGTTCAACAGGTCACATATGAATATGGCAAGTCTTCCCGTATCAAAAGCACCTGTGTCTATGGTGGAGCACCCAAAGGACCACAGATTCGAGACCTCGAGAGAGGTGTTGAGATTTGTATTGCCACACCTGGTCGCCTCATTGACTTCTTGGAGAGTGGGAAAACTAACCTGCGGCGCTGCACCTACCTTGTGCTGGATGAGGCTGACCGCATGCTGGACATGGGCTTTGAGCCACAGATTCGCAAGATAGTTGAACAAATCAGGCCTGATAGACAGACTCTGATGTGGAGCGCAACCTGGCCGAAGGAGGTCCGGCAGCTTGCCCAGGACTTCCTGAGGGACCACATCCAGATCAATATTGGCGCTCTTGAGCTCAGTGCCAACCATAACATCCTGCAGATTGTCGATGTCTGCATGGACAGTGAAAAGGACCGGAAACTTTTTCAGCTGATGGAGGAGATAATGGCTGAAAAAGAGAACAAAACCATCATCTTTGTGGAGACTAAGAAACGTTGTGATGATCTTACCAAGAGGATGAGGCGGGATGGgTGGCCAGCTATGTGTATCCATGGAGACAAGAGCCAGCCAGAAAGAGACTGGGTGCTTGCAGAATTTCGGAGTGGTAAAGCTCCCATACTGATTGCTACCGATGTGGCCTCTCGTGGTCTGGATGTGGAAGATATCAAGTTTGTCATCAACTATGACTATCCCAACTCCTCTGAGGATTATGTCCACCGTATTGGACGTACGGCCCGCAGCACCAACAAGGGCACTGCCTACACCTTCTTCACCCCAGGGAACCTGCGGCAGGCCCGAGACCTTGTCCGGGTGCTGGCGGAGGCCCGGCAGGCCATCAACCCCAAACTGCTCCAGTTTGTGGACGCAGGGCAAGGGGGAGGAAGAGGCGGTGGCAGAATGCGTTACCGCGGCAGCGGTTACAACAACCCTAGCCACATGTACCAGGGGGACTGTGATCGCCGCATGCACGCCGGTGGGGGCAGCGACAGCAAAGACGGCCGCAGTGGTTTCAGCCGCGAGGGCCGCAGCGATCGTAACGGAGAGCGCtccacttcctcctcttcctccttcaagGACAGGAGCCAGGATCACAGGAATAGCTACAACTCAGGCTCAGATCAGTACCAGAGTTACAGCAGCAGAGGGGGCTACAACTCCCGCAGCGCAGGCCAGTCTGCCGGAGGTCCGGAGAAGTCTAGCCAGCCGCCGGGTCCGTTTGGCCagcctcctcctgctcctcttcctcctccatcatCAGGGGGGGCGTGGCCTCTGATGGCTCACCAGTTTGCTCAACCAAAGCCAACGCCGATGGGCTTCATGGGGCAACCCTCTTACAATTTTGCTTctccaccccctcctcctccaggcCCTCCACCTCCCCGGAAGTAGAATTAGGAGCAAGACCCACTCATTTGCAGTGAGTTTATGTTAATTTGCACTACTTGGTGTGTTGACAGTGTTActttgtttttactctcagaTTCTTTGTCATTTCCAATAGGCGGGGCTTTGAAAAGGCATATATGCCTTTTCAATATCTATGTTGGTAATTGCTTACATTTTCATACTTTTTAATAATGCATCAAAACCATATTTTCAACCTTGATTGTAATTCTCCAGTCTTATACAGTTGCTCTCCATGTACCATGGAGGAGCTGTCATTCATCAACTGTATTAGGATTAGTATTTGGTTAGAATGAAAACTACATTTCCACTGAGTACTCAGTACTGGTACGTGGTTAAAAGCGCTGGTCTAGGGTAAAAATGATTTCTAATATGAACCGTCCCATTCCAGAGTCAAGTTTCCCTCTAGCTTCAGTAAAGTTAAAACTCCTTTTGACTAATTTTCTTAGAGGTTTTGATGCAATATAATTATtgcaatgattttttttgtttttattttaatggacTGTTGCACTAGATTTAGATACATTTTATCTCGTTACTTTTACCTGTCTGTAGTGAATCAAAACTGATGTTTCTGTTTACTTGTAACTGTTGAAGTCCcatattgttttattaaacagATAAGCTAATGCTGACTTATTTTCAGGGGGATTAACTAAA

Function

symbol description
ddx17 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human DDX17 (DEAD-box helicase 17).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX17

GO: NA

KEGG:

id description
K13178 DDX17; ATP-dependent RNA helicase DDX17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813314.1 True 2891 mRNA 0.49 13 35984246 35993088

Neighbor

gene id symbol gene type direction distance location
klf1 LOC106569090,LOC105898955,LOC107700996,LOC107559026 coding downstream 135785 35844287 ~ 35848461 (-)
LOC120563277 NA coding downstream 152947 35828755 ~ 35831299 (-)
nfil3-5 NA coding downstream 159078 35815772 ~ 35825168 (-)
LOC120564231 LOC103355955,LOC104967895 coding downstream 244576 35732968 ~ 35739670 (-)
LOC120555967 NA coding downstream 293218 35688489 ~ 35691028 (-)
LOC120566152 kiaa0430 coding upstream 29090 36022178 ~ 36041403 (-)
myh11a myh11 coding upstream 61826 36054914 ~ 36084518 (-)
cep20 fopnl coding upstream 95108 36088196 ~ 36091347 (-)
abcc6a LOC103355936,LOC100691027,LOC101464353 coding upstream 98845 36091933 ~ 36117858 (-)
ern2 NA coding upstream 181600 36174688 ~ 36188769 (-)
G10202 NA non-coding downstream 52391 35931599 ~ 35931855 (-)
G10200 NA non-coding downstream 54986 35928749 ~ 35929260 (-)
G10198 NA non-coding downstream 63170 35920855 ~ 35921076 (-)
G10174 NA non-coding downstream 141109 35799621 ~ 35843137 (-)
G10143 NA non-coding downstream 281654 35698632 ~ 35702592 (-)
G10349 NA non-coding upstream 168928 36162016 ~ 36166879 (-)
LOC120548049 NA non-coding upstream 288478 36281566 ~ 36284261 (-)
LOC120569597 NA non-coding upstream 288919 36282007 ~ 36282095 (-)
LOC120569600 NA non-coding upstream 289217 36282305 ~ 36282393 (-)
LOC120569596 NA non-coding upstream 289539 36282627 ~ 36282716 (-)
micall1a LOC100693188 other downstream 14980 35944048 ~ 35969266 (-)
LOC120572869 NA other downstream 397633 35584470 ~ 35586613 (-)
rgs12b rgs12,LOC104946104 other downstream 533035 35404815 ~ 35451211 (-)
G9997 NA other downstream 583772 35398640 ~ 35400474 (-)
G9740 NA other downstream 1526611 34452850 ~ 34457635 (-)
slc5a10 slc5a10,LOC102791530,LOC103460715 other upstream 240119 36233207 ~ 36256880 (-)
LOC120547992 NA other upstream 283766 36276854 ~ 36280814 (-)
LOC120561459 LOC103359169,LOC107395760 other upstream 336693 36329781 ~ 36337148 (-)
LOC120560464 kcnq5,LOC100711684,LOC102297355 other upstream 531183 36524271 ~ 36718918 (-)
rims1b LOC102800191,LOC102207824,LOC101482845,LOC102293251,LOC100711956,LOC103371245 other upstream 738010 36731098 ~ 36839548 (-)

Expression


Co-expression Network