avpi1


Basic Information

Item Value
gene id avpi1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17614153 ~ 17617081 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813782.1
TGTGTGCCACTGACGCACTGGTTGGAAGTGGGTCGGCTTGGCATTAGTGTGTAGTGTGAAGGTTGTTGTTTAGATGCTGGTTGAATGAgcagactgtctgtctgtgcatggTTACAGTTTGTCTCATTCAAACTACAGACCGGAAGctttccttcctgcttatcacctgcccccccccccaccctgaaATTGTCCTCCTGTCCTTATATCACCACCTGGAAGCTCCACCTTCGCAATATGGCAGAGGCCCTAGCATCCACCTCCTCTGAGGATGGCCTGCCTCTGCAGTGGAAACTTTCCAATCAACGAAGCAGGAAATCTGGATGCTCCAACATCTTTACAGGGCTCAACCTGCACCAGCTACACAGGCTGTTTAGAACAGCAGGAGACAGAGATGCTGAACATCGGGCTAAACTGGTGTGGCGAGGGATGGATGCAGATATAGAGGGGGCACAGGAGgcgaaggaggaggaaggggaggacaGCGAGGAAGAGGCAGGGCTGGCCCAGGCCTTGGTGAGGCTCCGAGTCCGAGCGAGGAACAAAGCTGGTATCAGAGCGGACACAGAGAGGCACAAGTGGCTCAGAGCATCAGGTTATCTCAGGATTGAGGAGCCATTATCCGGCTACCCTGTCAAGGATGAGGAGGCTGACATAGCGCCCAGTTCAGGAGAATTTCTGTCGGCGACTGAGGAAGACACCTCAGAGAACCAAAACCCCTTTAAACCCTCCTCGTGGAGGTTGGGTGTGGCAAGACATGAGGGTGCCAGTCACTCTGAACGCTACCTTCACCACATCATCCACTAACAACGACTGAATGGACTAAACTTGGAGCAACACACTGATGGAAGCTGAAGTCATGAAATACAGGATTGATTCAGCGCGAAATGGCATACTGTATTATTACTGTCAGCACCTTCTGCTAATATGTACTCTACATGTTAGACTCCAGCATAAAGAAATATCAGTAAACCTGGGGATTACTCCAACTATTATATACAATTCAAATGTGTATCTGTTCCAGTGCACGCATTATTGGCTGGGCAGTTCGTGTTTCAATTGCCAGATAACTCATGATATATTATCACTGTCATCGTGGCAGGATATGGAACACTGGATCAAGATCACTTTAACAGCATTTGTAGCAGagaatgttttgtgtttttgtgacttaaTACTAAAATAAACATCTAAATGAAGATGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107730030

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813782.1 True 1204 mRNA 0.49 3 17614153 17617081

Neighbor

gene id symbol gene type direction distance location
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding downstream 7851 17602906 ~ 17606302 (-)
exosc1 exosc1,LOC107700859 coding downstream 15305 17594016 ~ 17598848 (-)
pkd1a pkd1 coding downstream 89307 17458774 ~ 17524846 (-)
nthl1 nthl1,LOC102778712 coding downstream 185538 17423593 ~ 17428615 (-)
rfx1b NA coding downstream 229122 17369504 ~ 17385031 (-)
crtac1a LOC104945331,LOC103368018 coding upstream 24225 17641306 ~ 17647822 (-)
LOC120569316 LOC104945333,LOC102299380,LOC102207980,LOC101475478 coding upstream 40066 17657147 ~ 17676202 (-)
LOC120562183 tekt4 coding upstream 60589 17677670 ~ 17681784 (-)
LOC120560159 NA coding upstream 76476 17693557 ~ 17754482 (-)
LOC120556506 NA coding upstream 140588 17757669 ~ 17763809 (-)
G5506 NA non-coding downstream 945 17557841 ~ 17613208 (-)
G5449 NA non-coding downstream 166119 17399905 ~ 17448034 (-)
G5435 LOC104952676 non-coding downstream 263178 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 280543 17331757 ~ 17333610 (-)
G5402 NA non-coding downstream 296333 17317276 ~ 17317820 (-)
G5522 NA non-coding upstream 106 17617187 ~ 17645665 (-)
LOC120560186 NA non-coding upstream 82179 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 86135 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 120991 17738072 ~ 17739847 (-)
G5616 NA non-coding upstream 164699 17781780 ~ 17782013 (-)
LOC120569099 NA other downstream 193055 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1266231 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1928514 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2709924 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2895051 14712144 ~ 14719102 (-)
LOC120560175 NA other upstream 93558 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 200426 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 218823 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 262787 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1267887 18884968 ~ 18890220 (-)

Expression


Co-expression Network