LOC120567401 (nxnl1,LOC103362235,LOC101486728)


Basic Information

Item Value
gene id LOC120567401
gene name nxnl1,LOC103362235,LOC101486728
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18702438 ~ 18705754 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814364.1
GCTGTGAACTGATTCAAGTACGACCCAGGAGGAgttgaaaagaagaagaaaaaactataTTTTGAAAGCTGTTTCCTTTTTGGATCAAGGGGAGATAACATTTGTGAGAGCCCCAGTCCACCTTCCTGTGACACTTCATCATGGTGGACCTGTTTGTTGACCGGGTGCTGGTGAAGAACAACACGGACCAGGATGAGCTAGACACAGAACGGGAGATTGTCATGCGCCTGCAGAACCGCATCCTGATGCTCTATTTTGCGTCTGCTGCATGTGAGAGCTGCCAGCAGTTTGCTCCGACGCTCACCGACTTCTTTGAACGATTGACAGATGAATTTTATGTGGACCGCGGTGCTCAGCTTGTTCTCCTGTACATaagTTTGGACCAGTCAGAGGAACAGCAAGAAAGCTTCCTCAAAAAGCTGCCCAAGAAGTGCCTGTTCCTGGCCTACGAGGACCCCTACAGGAGagAGCTGAAGGCCATGTTTAACGTGGAGGAGCTGCCCACAGTGGTGGTGCTGCGCCCCGACTGCTCCATCCTCATCCCTAACGCGGTGAAGGAAATACTCTGCCAAGGCCCAGACTGCTACCGCAACTGGCAGGAAGCAGCAGAGCTCATCGACCGGAATTTCATGATCAGCGAGGACTTTGAGGGGAAGTCCATGCGCAGCTTGAGTGACCCTGTGAGAAGACTGAAGTACAAGGTGGAagataagaagaagaaaaagaagaagaaaaaggacagagggtggggtggaggtggagaggaaGATGCAGAAGTGGAGGGAGGAGCGGATGGCAAGGATGGAGGAAGGTCATCATGGTGATGGGACAATACTGTGGGTTTCCCCAAAAGTTACCATGTTTGGTAATAAAAAGCTTTGTCACAAGGTACAATGCTGATGCTGCCAATGTAACACAGCGTTACCAAACAAAACCCTTTTTACAGCTCAATGTCAGACAATACTGGCAAATCTGGCGTTACTGTCACTAGATTTGCTTTTCTATAGCGCCAATCAACTCCTGTGGCCTTACCGGAAAAATATTGCCTGTATAAGTGGGTGTGGATATGGCAACAACcaataaaaaagtaaagtaaaagacTGTCTAAATTAACACTGAATACTGCTAACCAATGCTGACCTCAGCTTAGAATTGGCTGACTTTAATATCTTTGAAAGCTGCCAAGTATACAGTCAAGCCAAGGTTATGTCTGAGCCAAGTCTTACTATTATGGCTTGTTTTATTACACCCAGGAGATTCTTCCACACATTTTCCCATTTTCAACGACACAGCTTTGTAAcgcgaattttttttttacgtggtAATTTGTACCATCCAATCAAAACATCTGAAATCAATGAATTATTCAGCGgctttaaaataattttgttaGTGACTGTTGTGCTTTGAGTGTTTATGAAGTCTGGCTCCACTTTACAGGCTACACATGAAGCAATCAGAGTTATTCAAAGGCAGTCAAGTGAAATTATGGAGAAACTGGCTTTTCTATATAGTCAGTGATTTCCTTTGACATGACTCAGTGTCTTTCATAAGGACTGTGTTTAGCCTTTGCACACTTCCTTGCACACGTAGACTGCATAAATGATGCTTTTATAGGATCAATCAGGATCTAGATAGACAAGAGGAAGATGGGAGGTTATCTTGTATCCTCATTATCTGAGtgacctaataataataataataataatgcattttatttatgggcacctttcatagcactcaaggacaccttacagttaaaacaagcaaaaatacagttaaaaaggcaaacataactaaattaaaacaataacatttaaaaGATTGAGATAGAAAATTGAAAGGAAGCAATCTATCCATGATTTTGACGTAGAGTGGAGTCATGTGGGGTAGGCCCTTCGGAATAGGTGGGTTTTGAGGGAGGTTTTAAAGGTGGGTAGAGACTCTATGGTACAGATGGACAACGGGAGGGAGTTCCAAAGGCAACACCTAAACCTTTATATGCTGCCATTACTCCtgaaaagcaaatacaaaaagCAATAGAGTGCATTTTTGCATGGTAGGAGTAGTGGCAGTAGTGGCAGATTACAGTAACATGCTTCTGCAGAGACAGGTGATGAAACCAGAATGCCATCAGCTGTCATCAAGGTGTGACATGCTTTATAAATGGCGATGACATGATGATTTATTTCAAAGCCGGCAGATTGACAAATAGGCAACATTTTCACAGCAAAGGACTTCcttaaaatggaaatattgCAAATTCCTGTGCTTGATTTATGTGCATATCCTGCTACACAGCAAACAATAGCTTTACAATACCCTTTCTGCGTGTTCTCCTCATATGAGAAATGTGAATGCTAAACCTAAATCTGAGCTGGTCAGTCCTGTAAAAAGACACAACGGTGTAAATAAACATGAACCACTGTTTATTCTA

Function

symbol description
nxnl1 Predicted to be involved in photoreceptor cell maintenance. Predicted to be located in photoreceptor outer segment. Orthologous to human NXNL1 (nucleoredoxin like 1).

NR:

description
PREDICTED: nucleoredoxin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814364.1 True 2437 mRNA 0.43 4 18702438 18705754

Neighbor

gene id symbol gene type direction distance location
LOC120557593 LOC103362234 coding downstream 229 18675408 ~ 18702209 (-)
LOC120571862 NA coding downstream 54038 18646159 ~ 18648400 (-)
tmed1b LOC104964575,LOC104925388,LOC103362227,LOC101073760 coding downstream 73313 18624108 ~ 18629125 (-)
tecrb tecr,LOC107390378 coding downstream 149604 18539663 ~ 18552834 (-)
b3gntl1 b3gntl1,LOC105924764 coding downstream 889863 17794352 ~ 17812575 (-)
LOC120563085 colgalt1,LOC102311502,LOC100712117,LOC103362237 coding upstream 7182 18712936 ~ 18726750 (-)
LOC120563090 NA coding upstream 21646 18727400 ~ 18736521 (-)
LOC120559642 slc27a1,LOC103362239 coding upstream 37815 18743569 ~ 18751991 (-)
LOC120559658 LOC104952753 coding upstream 46905 18752659 ~ 18766884 (-)
LOC120562921 LOC104952754,LOC103372004 coding upstream 78171 18783925 ~ 18787858 (-)
G5894 NA non-coding downstream 13393 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding downstream 37931 18663944 ~ 18664507 (-)
G5809 NA non-coding downstream 114902 18584673 ~ 18587536 (-)
G5801 NA non-coding downstream 127107 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 128184 18574050 ~ 18574254 (-)
G5921 LOC103372008 non-coding upstream 130523 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 169121 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 224502 18930256 ~ 18930500 (-)
G5954 NA non-coding upstream 250653 18956407 ~ 18956631 (-)
G5970 NA non-coding upstream 255458 18961212 ~ 18961997 (-)
LOC120556582 NA other downstream 820679 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 854401 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 866677 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 988540 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1281340 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 179214 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 266216 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 317462 19023216 ~ 19037081 (-)
G6084 NA other upstream 783834 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1059139 19764893 ~ 19765387 (-)

Expression


Co-expression Network