ccdc130 (ccdc130)


Basic Information

Item Value
gene id ccdc130
gene name ccdc130
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10625324 ~ 10631727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814773.1
CTTTCCCGTCTTCTTGACACCGATACTTCCCACAATCCTCTGCAACGTGACGCCACTTCCGGATCCTGGAAATTACCCATCAGCCCTCTAGTTTTACTATTTGGTCGATGGTTGTTTTTGCAACTAGCTACAAGAGCACTGGGAGAATCCATTACTAGCGTGGAGATCCAGTCGCCACAATGGGTGAAAGAAAAGGAACAAACAAATACTACCCTccagattttgatccggccaaGCATGGATCCCTCAATGGCTATCATAAAACTCACGCCCTGCGGGAGAGGGCCAGGAAACTGTCCCAGGGCATCCTCATTATCAGGTTTGAGATGCCATACAACATCTGGTGTGATGGCTGTAAAAATCACATAGGCATGGGGGTCCGTTACAATGCTGAGAAGAAGAAAGTGGGGAACTACTACACCACGCCAATCTACAGGTTTAGGATGAAGTGCCATCTGTGTGTCAACTACATCGAGATGCAGACGGATCCGGCGACCTGCGACTATTTAATAGTAAGCGGGGCGAGCAGGAAGGAGGAACGCTGGGACATGGCGGAGAATGAGCAGATCCTCACCACGGAGCGGGCAGAGAAGGAGAAACTTGAGACGGATGCCATGTTCAAACTTGACCATGGTGGGCAAGACAAGGAGAAGCTTAAGAAGGCTCTGCCTTCTCTGTCCGAGATCCAAGACTACCAGTCCAGCAAGAAGGACGACTTCCAGCTCAACAGCTCCCTCCGCAGGAAGTTCAGGACCGAGAAGAAAGTTCGCGCTGAGCAGGAGGAGAAGGACAACTCGGTGAGGATGAGGACCAACCTGTCTATCCCATTGCTgccagagaaggaggaggacaaGAAACTGGCAGCACTGCTCACATACCAGGCACCTGACTCCTATGAGGACAAGCAGCACAGCAAGCGGAAAGAGATTGCCTCCCGTTCGTGGTTCAACTCTGCCTCGGCCACACCGGGAACTGCTGCAGGGAGTCTGCTCCACAAGCTGGGCCTGCAGGGGAAAGAAGCAGCAGTAGCCAAAGCCCTGGGCTCCTCACCCGGCTCCCTGATCCGGAAACGCTCAGGAGGACTGGGAGCAAAAAGCGAACCGTGCGCCACCATCGCTCGCAGGAAGTCAAACCCTGAAATCAACATGTGTAACGGAGAGGTCCCTCAGAGAGAGGAGGCCCCAAGTATAGTAGCAACACAAACGGGTCAGCACGTAACAGAGACAAATGACAATGGCTCCAGGGAGACGCATGTTAAAACCACAGAGGAAGCAGATAAAGGACTGACAAAAGCAAAGGATTTTGGGAAGGTGAAGGAACAAGGCAGAAGTTTAGGAGCACTTGGATCCTTGGTGGCAGACTACAGCGACTCAGATTCAGACCCTGGACAATGAGGCTGAATGATGAGCTGAAAGGGACAATTTCTGTATTTAATGAACGGAGGTCTTCATACGCAAAGTCAATGTGTCCTTGTGTGAGAGTGAAATAAACTGGAGATGTTTGTCACGACCGCAGACATCTTCTGTAACGCATGTTGTTTTTCacttaaacaaaacaaacagtgatGGTTAAGTTAACTGTCTGATCGGAAATACTTTAGttttaataaactgtgaaaTAAGATTTTAATTTTAAGCTTGGCGGCCTGTAGAATTCATTGTCATAAATGTTAAATGACAACAGCATCTCTTAAATATGTGTTTGAAAAGAAAGAGTTAGTAATATAGAGTATATAAGGCCTCTGTGCAGAAACTACAAACCCAGCTTAAAGTAGTTggttatttagatttttaaattGAATACATATGTGTgatctagggctgcacaatatattgttttatcgtcattgcaatatcaactggcgcaatatacaTATTGTGAAAGGTTGTGacatatcgcgatagacactacgagattttttgtgtttagttgaagaaaatatcagtagaaaactgcactttaaagtgTATATGTCATTCTTTTGTCATggtcaattcaatgttcaataaaagaatgttagaaaggacaattgttttaaattcaaaaagcaatttgttgtattttaaaagaatACTGAACACAACagaaggcagaactgagtacactcaAATATCTGTTAATTATTCAAAGACATTATCGcgtattgcatattttcctcatatcgtgcagccctaatgtgaTCTGATGACAAAACTGTCAGGCaccttatgaaataaaaaaaaaaacactgtaaaatACCGTT

Function

symbol description
ccdc130 Predicted to be involved in RNA splicing. Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human YJU2B (YJU2 splicing factor homolog B).

NR:

description
PREDICTED: coiled-coil domain-containing protein 130

GO: NA

KEGG:

id description
K13115 CCDC130; coiled-coil domain-containing protein 130

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814773.1 True 2242 mRNA 0.45 10 10625324 10631727

Neighbor

gene id symbol gene type direction distance location
LOC120567745 LOC101486982,LOC102213734 coding downstream 1309 10579285 ~ 10624015 (-)
LOC120567750 LOC103370659 coding downstream 53554 10497323 ~ 10571770 (-)
LOC120565745 NA coding downstream 443337 10172085 ~ 10181987 (-)
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 1037358 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 1135584 9477680 ~ 9489740 (-)
wdr83 wdr83,LOC102798015 coding upstream 15350 10647077 ~ 10655066 (-)
ier2b NA coding upstream 292944 10924671 ~ 10926308 (-)
man2b1 man2b1 coding upstream 390867 11022594 ~ 11047950 (-)
LOC120555815 LOC103383434 coding upstream 422260 11053987 ~ 11076146 (-)
gtpbp1l LOC101485704,LOC102291158,LOC102198385,LOC103371799,LOC100709644 coding upstream 1035800 11667527 ~ 11685699 (-)
G3493 NA non-coding downstream 262 10624780 ~ 10625062 (-)
LOC120559609 NA non-coding downstream 412449 10211424 ~ 10212875 (-)
G3439 NA non-coding downstream 464515 10159224 ~ 10160809 (-)
G3424 NA non-coding downstream 524926 10099057 ~ 10100398 (-)
G3421 NA non-coding downstream 526062 10088618 ~ 10099262 (-)
G3498 NA non-coding upstream 25609 10657336 ~ 10662561 (-)
G3557 LOC103372545 non-coding upstream 201843 10833570 ~ 10833876 (-)
G3566 NA non-coding upstream 246964 10878691 ~ 10878890 (-)
G3580 NA non-coding upstream 251420 10883147 ~ 10883412 (-)
G3581 NA non-coding upstream 254103 10885830 ~ 10886075 (-)
LOC120559237 LOC103359075 other downstream 414020 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 583320 9840590 ~ 10042004 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 984810 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 1057479 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 1717238 8905672 ~ 8908086 (-)
G3586 LOC104950333 other upstream 267831 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 334635 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2010286 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 2172775 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 2228557 12860284 ~ 12860355 (-)

Expression


Co-expression Network