XLOC_004614


Basic Information

Item Value
gene id XLOC_004614
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16583373 ~ 16585054 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010909
ctgGACCATTTTGATTTGTACATGATATAGCTAGATGTAATATGActcgtttttataaaatatgagtgtttttaatctttccCATAAGACTCTACTTCAAATTATGTACAGCTAAGCGCCCTCTACAGGAAAACTACATAAAAGGCGCTTAAAAAGGATTGCCGCCTAAATAAAGCTCCCTTAACAAAAGGAACGCAAATTTGTTCTCCGTGATCAACCCAAATGCAACTACCGTGGAAGAAAAGctGTTCTTGATGTCATACATTGCTACAAAAGGCTTTTGAAGTGGACAAGACGTGGACCAACCATGACCAGAGCGTTTCAGAGAGAAGGTGTCTCTCAAAATGCAGTGGCTCAGCTTGCTGCAATTGCAGAGCTGTACTTTGCTAACAGGGAGGGATTTAACAGCATCAGCTTCACACCAGGACAATTAACAGTTCGCTCAAAAGTGTAGAGAGttcatttttggagatttttgcataaaTGTTGTATCAATAAAAAGGAAGGGTTCACTTTTGTCTTTTTATCTGAATAAGTGATTAGAGTAGATTTGCTATGTCACTTATTGTTGCCATGTTTattgtatgtttctttgttcaataatgctcctgtttactgttggtaaaatgtagaagcaaaaaCTTACAGCACAATAAACTTGGCttataatgcca

Function

GO:

id name namespace
GO:0009798 axis specification biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050793 regulation of developmental process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010909 True 674 lncRNA 0.37 2 16583373 16585054

Neighbor

gene id symbol gene type direction distance location
XLOC_004613 NA coding upstream 13329 16567854 ~ 16570044 (+)
XLOC_004612 NA coding upstream 91567 16490198 ~ 16491806 (+)
XLOC_004611 NA coding upstream 95806 16486965 ~ 16487567 (+)
XLOC_004610 kif20bb coding upstream 104082 16452575 ~ 16479291 (+)
XLOC_004609 ankrd1b coding upstream 137000 16440708 ~ 16446373 (+)
XLOC_004615 NA coding downstream 157341 16742395 ~ 16874703 (+)
XLOC_004616 zgc:174153 coding downstream 364337 16949391 ~ 16951851 (+)
XLOC_004617 pank1b coding downstream 368361 16953415 ~ 16964840 (+)
XLOC_004618 dre-mir-107a coding downstream 375639 16960693 ~ 16960781 (+)
XLOC_004619 slc16a12b coding downstream 382661 16967715 ~ 16986968 (+)
XLOC_004603 NA non-coding upstream 634822 15948036 ~ 15948551 (+)
XLOC_004602 NA non-coding upstream 657576 15904124 ~ 15925797 (+)
XLOC_004624 AL731788.1 non-coding downstream 760496 17345550 ~ 17345667 (+)
XLOC_004625 NA non-coding downstream 839377 17424431 ~ 17427380 (+)
XLOC_004634 BX005075.1 non-coding downstream 1540604 18125658 ~ 18125774 (+)

Expression


Co-expression Network