mchr1a (LOC103354888,LOC104947992,LOC102295449,LOC102791021)


Basic Information

Item Value
gene id mchr1a
gene name LOC103354888,LOC104947992,LOC102295449,LOC102791021
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22993868 ~ 22997980 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814978.1
AGAGCGTCAGACGAGTCAAGATGCTCTCACAAGCTCTTTATCAATACCGATGAACGGCTTTATCGTCACTGACGGCACAGAGCTTATAGAACCACAAGCTGCTTGTGCTGTAAagaatttcattttttaaaacagGATTTACCTTGATGCATTTTACTTGGGAAGCAGGCACTtagcaatactttttttttttacttggatATACTTTGAAATACCCATGGATTTCTTAAACGATAGTAATTTTTCCCTCGGAGACACTAatacaacaacatcaacaacagCTGTAGATGGGGCTCTTCACTGCAGTGCCATCCTCCCCGTCATCTTTGGAGTCATCTGCTTTCTGGGTATCATGGGGAACTGTATTGTCATCTACACCATAATGAAAAAGACCAAGTGCTGTGCCAAGCAAACTGTTCCAGACATATTTATCTTAAATTTGTCAATTGTTGATCTCCTGTTCCTCCTTGGTATGCCATTCCTCATCCACCAGCTGCTGGGCAACGGCACCTGGCACTTTGGAGCTGAAATGTGTAGAGTCATCACTGCGCTTGACTCCAATAGCCAGATTGTCAGTACTTACATCCTCACTGCAATGACCCTCGACCGTTACTTGGCTACGGTCCATCCCATCCGCTTCAACTACATCCGCACACCTTGTGTGGCAGCGCTGGTCATTGGCCTGGTGTGGGGTCTGTCCTTACTCACCATCATCCCTGTGTGGATGTATGCAGGCCTGATGGCTCTACCTGATGGCCTGGTGGCCTGTGCTCTCCTTCTGCCTGACGCAGTCACTGACATATACTGGTTTACACTTTACCAGTTCTTCTTGGCCTTTGCTATACCTTTGGCCATCATCTGCCTGGTGTTCTTCAAGATCCTCCAGCACATGTCCGCCAGCGTTGCACCACTGCCTCCGTGGAGTTTGAGGGTGCGCACCAGAAAGGTGACCCGGATGGCAGTGGCTATCTGCCTGGCTTTTTTCATCTGTTGGGCCCCTTACTACATCCTTCAGCTGATCCATCTAGGGGTGCAGAAGCCAAGCATAGCTTTCTCCTATGCCTACAACATAGCTATTAGCATGGGATATGCTAACAGTTGCATCAACCCATTCCTCTACATTATCCTTAGTGAGACCTTCAAGAGTCAGTTTCTCAGGGCTGTACGCCCAGTTAACAGAAAGTTCCGTGTGAACCCGAGCACCACAGAGGGTggcagtgtgagtgtgagaatGGTACCTGAAGGGGCTCAGCAGGAGCCAGCCTCTCGGGAGATGATACCATCCAACATGGCCCCACAATAAAGAATCCAAATAACGTGCAACTGTGGATCTTTGCAGCTGGTAAGAACTATGAATGGGACGTTATCATCAAGAACACAtcgggtttttcctgcatagaggaatttttggTGCCCCCCAAAGAGCTTTAAGCCAGCCCTAAaggaaaatcactttttttttattcacaaaaattgagaataaaaatagcaattcaaatctTCTCTAAATGTGTTTAAGAGCAATTTATTAAACAACCGTTAAACAGGCAGAACACAAACTTGAATATAAGAGCTAATCTCAGTTTTATCTCCAGAGTAAGGCTGTACCAGACTctcttaaatattaatattattttttttttttatttttttaaccagttttgttaTT

Function

NR:

description
PREDICTED: melanin-concentrating hormone receptor 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030273 melanin-concentrating hormone receptor activity molecular_function

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814978.1 True 1669 mRNA 0.45 2 22993868 22997980

Neighbor

gene id symbol gene type direction distance location
stx8 stx8 coding downstream 159404 22785495 ~ 22834464 (-)
pik3r5 pik3r5 coding downstream 273053 22692787 ~ 22720815 (-)
LOC120558762 LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580 coding downstream 328655 22654181 ~ 22665213 (-)
si:dkey-45d16.4 LOC104950130 coding downstream 352124 22635884 ~ 22641744 (-)
LOC120558725 LOC103354901,LOC103383579 coding downstream 358928 22619670 ~ 22634940 (-)
LOC120561952 NA coding upstream 172827 23170807 ~ 23173617 (-)
LOC120546964 NA coding upstream 422300 23420280 ~ 23431271 (-)
znf207b znf207,LOC104947983,LOC103374438 coding upstream 432957 23430937 ~ 23438268 (-)
rhbdl3 rhbdl3,LOC102785192 coding upstream 440851 23438831 ~ 23501859 (-)
rhot1b LOC103373013,LOC101484650,LOC100702459,LOC102784702,LOC102202739 coding upstream 510805 23508785 ~ 23524162 (-)
G6880 usp43 non-coding downstream 20542 22972882 ~ 22973326 (-)
G6879 NA non-coding downstream 59977 22924831 ~ 22933891 (-)
G6834 NA non-coding downstream 340082 22651532 ~ 22653786 (-)
LOC120562974 NA non-coding downstream 389915 22601388 ~ 22603953 (-)
G6762 ddx39a,LOC103150096 non-coding downstream 668485 22324550 ~ 22325383 (-)
G6907 LOC107382332,LOC106515271,LOC102218172,LOC108242722,LOC103383557 non-coding upstream 55339 23053319 ~ 23058150 (-)
LOC120556418 NA non-coding upstream 132474 23130454 ~ 23135775 (-)
G6947 LOC104947985,LOC103354881 non-coding upstream 252215 23250195 ~ 23253876 (-)
G6986 NA non-coding upstream 410297 23408277 ~ 23409202 (-)
G6993 NA non-coding upstream 429532 23427512 ~ 23429145 (-)
G6881 usp43,LOC104947996 other downstream 5368 22981925 ~ 22988500 (-)
LOC120565362 pik3r6 other downstream 301535 22665375 ~ 22692333 (-)
LOC120556502 LOC104944681,LOC103364456 other downstream 658285 22328519 ~ 22335583 (-)
G6592 ube2o,LOC106534564 other downstream 1284056 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 1424809 21563091 ~ 21569059 (-)
G6924 NA other upstream 90520 23088500 ~ 23164937 (-)
G6943 NA other upstream 215876 23213856 ~ 23242290 (-)
G7065 NA other upstream 574725 23572705 ~ 23573049 (-)
LOC120557242 NA other upstream 713847 23711827 ~ 23720750 (-)
si:ch211-207j7.2 NA other upstream 736384 23734364 ~ 23746031 (-)

Expression


Co-expression Network