LOC120567942 (sphk1)


Basic Information

Item Value
gene id LOC120567942
gene name sphk1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 21755292 ~ 21792116 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815051.1
AATTCGGTTTCTCTTGACACTTACGAGCAGCAGGCTGTCAGTTGCAGTTCTCCACTTTGCTCTGCTCGTACCATCCAGGCGAGTAGGCTAGCTATGTGACAGAGTGGCCGCTGCTCTATCCCGGACCCCCCGCGTCGAAGTCTCCCCCGTCCACTCAGGATGGATCAGAGGAGAGCTGACACCAGCATCAACCCGGTTTCGCTGTACGGGGAATTTACGGTCACTGGTTGCCGAAAAGCCAGGTGTGCCGTGAGCTTGACCGAGAAGGACCTCATCGTCCAGAGGATTCTTTTGGCACCTGTCGGGCGAAACAAGGTGGTGCTCAGTCTGAAGGACTGTGTCGGTTGCAGGGCATACCGGGAAGATGACAACGCGGACCCGGCAGCACACTTGGCAGTCTACTTCTACCCGCTCAAACGCCGCTGGATGAGTTCCGGGCTGTCGCGGCAGAGAGCGGAGCACTGCTTTCGTCTCGCTTCGCTCCAGGACCCGTGCGCTAACCTGGAGGAGGCGGAGAAGTGGGCTCGCGCTGTTCGAGAACGCTCTACACGGCAACAGTACCTAAGAGACGGGGTGTCGCTGAGCTTGTTGTCTCGTCCGAGCCGGATGATGCTCCTTGTGAACCCGCAGAGCGGGAAGGGACAGGCGCTCACTCTCTACAACAACCACATCCAACGAATGCTCAACGAGGCGGGGGTTACACACACTGTGGTCATCACCGAGAGGCAGAACCACGCCCGAGAGCTGGTGAAGGAGACCGACCTGTCGCAGTGGGACGCTTTAGTCATCATGTCCGGAGATGGACTTCTGTTTGAGGTGATAAATGGTCTGCTGGAGAGACCAGACTGGGAGGAGGCCATCCGAACCCCGCTGGGTATTCTTCCTAGTGGATCAGGCAATGCCTTGGCTGCATCTATACATCACTACTCTGGAGTCCCGCCGGTGTTCAGTGAGGAGCTCCTTGTCAGCTGTGGTTTCCTGCTCTGTCAAAGACTTGTGGCCCGAATGGACCTGGTCTCCATCCATGTGGCCTCCAGCCCTCGtctcttctccttcctctcgCTGGCCTGGGGCTTTGTGGCCGACGTCGACATAGAGAGCGAGAAGTACCGTCATGTCGGTGCTGCCCGGTTCACTATTGGCACGCTGGTGAGGCTGGCTTCTCTCCACGTCTACAAGGGAAAGCTGGCTTACCTGCCCGCCACAGAGGACTACAGCATCGAGGAGGGTTTGGAAAATAACAAGACACTGCATTGTAACAATCAGGTTTCCTCCTTGGCTTCGGCCTCTCGACCATCCAGAGACTCTCCCTGCCAGAACACTTTTCACAACTCCTGCCACTCCAACAACTCCCTCAAAGCGCAGAGAACGGAGAGCACGCCTTCTCGAAGCGCCACCAAAGCCCTCGCAGGCCCGTCTGACTCCCTTCTGCTGCCTCTTGACCAGCCGCTGCCCAGCGACTGGGTGGTGGTGCAGGAGGAAGACTTTGTCCTCATGCTGGCCATGTACCAGTCCCACCTGGCGGAGGACCTGCTGGCAGCCCCAGGCGCCACCTTGGATGACGGCTTCATCCATCTCATCTATGTCAGAGCGGGTATATCACGCGCCGCGCTGCTGAAGCTGTTCCTAGCTATGGAGAAGGGTGCACATCTGGCTACTAACTGTCAGCATTTAGTGCACACTAAGGTGCGGGCGCTCAGGCTGGAGCCACATTCACCCAAAGGGATAATAACAGTAGATGGAGAAGTGGTGGAATATGGGCCGGTGCAAGCAGAGGTACACAGAGGCCTGGCGAGATTAATCACTGGATGAACAATCATCACCACCAGCTTTCATCTCTATTAAAAGcccaataaacacattttagcaTTTCAA

Function

symbol description
sphk1 Acts upstream of or within blood vessel endothelial cell migration.

NR:

description
PREDICTED: sphingosine kinase 1

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815051.1 True 1875 mRNA 0.57 5 21755292 21792116

Neighbor

gene id symbol gene type direction distance location
aanat1 aanat,LOC102776855 coding downstream 48441 21703381 ~ 21706851 (-)
ten1 ten1 coding downstream 106386 21645797 ~ 21648906 (-)
LOC120566963 NA coding downstream 193649 21557960 ~ 21561643 (-)
LOC120566968 LOC106610423,LOC105006713,LOC108260735,LOC106610424 coding downstream 199127 21554425 ~ 21556165 (-)
LOC120566976 NA coding downstream 210573 21542336 ~ 21544719 (-)
LOC120557332 NA coding upstream 20592 21812708 ~ 21818443 (-)
cygb2 cygb,LOC104922950,LOC103373403 coding upstream 64554 21856670 ~ 21877258 (-)
LOC120558174 ubn2,LOC103364441 coding upstream 208152 22000268 ~ 22020435 (-)
ttc26 ttc26,LOC102798810 coding upstream 230128 22022244 ~ 22033208 (-)
slc25a38b LOC103364442,LOC107382263,LOC108242715,LOC106515296,LOC105939773,LOC103153186,LOC101165446,LOC106917329 coding upstream 249609 22041725 ~ 22051538 (-)
G6615 NA non-coding downstream 1134 21753721 ~ 21754158 (-)
G6616 NA non-coding downstream 2148 21751844 ~ 21753144 (-)
G6602 NA non-coding downstream 12182 21742856 ~ 21743110 (-)
G6595 NA non-coding downstream 27555 21726389 ~ 21727737 (-)
G6571 NA non-coding downstream 87587 21664495 ~ 21667705 (-)
LOC120568701 NA non-coding upstream 19084 21811200 ~ 21811923 (-)
G6618 NA non-coding upstream 43711 21835827 ~ 21847633 (-)
G6653 NA non-coding upstream 175888 21968004 ~ 21976241 (-)
G6654 NA non-coding upstream 176731 21968847 ~ 21977148 (-)
LOC120568056 NA non-coding upstream 243169 22035285 ~ 22040931 (-)
G6592 ube2o,LOC106534564 other downstream 45480 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 186233 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 1561954 20187281 ~ 20193338 (-)
spink4 NA other downstream 1710566 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 1958770 19766497 ~ 19796522 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 536403 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 873259 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 1189809 22981925 ~ 22988500 (-)
G6924 NA other upstream 1296384 23088500 ~ 23164937 (-)
G6943 NA other upstream 1421740 23213856 ~ 23242290 (-)

Expression


Co-expression Network