afmid (afmid,LOC102792082)


Basic Information

Item Value
gene id afmid
gene name afmid,LOC102792082
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16907096 ~ 16924598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815126.1
tttcgtttttggtttaaaacgaaAAACGGATTATACTTTAGGGCCCTGACCGATATGGTAAGGGAATGGAGCATATAGGACTGTTAGAGACAGATAGGGGGAGAATTGTTGTTTGTCATTGCCGGTCACTGGTTTTGCAATAAAACTTGAAAGAAGAAACAAATAAGGGGAGGATACTATGTAAAGTTCAGTCTATGGTCTAAAGTTCAGCCCCTCAGCATGCGCACTATGTGGCTCGGATTGATCTGCCAGCGGACTTTCGGCGAGTCAAGTCACTtcaagagaaagaaaatgatGCACTGGACTGAACTTAAGAAAGAAGAGCTCGAGAGGCAGTTTTCACCCAGCCTGTGGTCGCACAGGATGTCTGCAGACGACGTGATCAAGGCTCACGTGAAGGCTTTAAAGGAAGGTACAGAGCGTGCCCGTGGCCTGGCTCAAACGTTGCTCAATGTGCCATATggggagggagatggagagaaacTGGATGTCTACATACCCAGCACCAACTCTTTGGATGTCCCCCTTGTCATTTACCTACATGGAGGCTACTGGCAGTTTCTCAGCAAGGAGGAGTCGGGATTCATGGCTGTTCCACTCGTTGATAAAGGTGTAGTGGTGGTTGCTGTCGGCTATGACATCGCCCCTAAAGGCAACATGGACTTGATGGTGTCTCAAGTACGCAGGAGTGTTGTGTCTGTTGTTCAGCAGTATTCTCACATCAGTGGTCTGTACCTGTGTGGCCACTCTGCTGGGGCTCACCTGGCTGCAATGGTTCTCTCCACTGACTGGTCGGAGTACAGCATCACTCCTCAGATCAAAGGTGCTTTTCTTGTCAGTGGCATATATGACCTCCTGCCCATCCTGTCCACCTACGTCAACGAGCCTTTGAAGATGACAGAGGAGGTGGCGGTGAGGAACAGCCCCAGCAAGCTGGTCCCTCAGCTCAaactctcctcctccagctgtcACGTCGTTGTGGCCGTCGCTGAGAACGACTCGCCGGAGTTTCGCAAGCAGTCGGAAGAATACTACAAAACTTTGGAGGCGTCCGGACTTGATGTGACCTTTGAGGACGTGGCGAACACAGACCACTTCAGTATCATTGAGCAACTGGTAGATGGGGAGTATCACCTAACAAAGCTTCTCTTAAAGATGATGGGGAAGAGCTGAGGCGTCGGCCTTTGATTCCTCATCTACTATCAACATACCTCTGTATCAACATACACCTCTGTCCCCCCGATTTATGCATTATTTCAGGTTTGTACAATAGTAAATGTACAATTTCTATCTTGTTGATTGTTCAACCATCAGGTGGCATGGATTGTTTTGACTGCCTAGTAGTTTACTGTATCATTACTTACAGCTGTTTGTTCACTGTAGATACTACTGTCAGAAAAATGTGCTATGAAAACAGTGTGTACCTAAAACCGAGTCACTTCAAGGAGGGTGATTGTAGCAAATGATACTGCTGTTAAACCTGCTCATGTTCACTTGTAAACAGATTATCTAACGAGCATAGTGTACAGTGTAATCATCAGGAAGcaccgttccaccggcacgctGTGAGTTGTAGAGCTGATGGTTAGTTTTGGCATTTCTCCAGTGTTTTGTAAAAGGGTGGGTCTGTCCGTTTGGTGTTTTGTTCTTGTTACAATCTGTTCCACAACTTAAAGTCCATGGGTAGGACAGGAATAGGAGCTCGGAGTACTAATATATCATACGAAGTGAATGTAGCTTTTGATTGTAACCTTCGCAATGCTGATATCTAATCTAAGCAATTGGGCAAAAGGAATTTAATGACCACTATATATTTACACTGTTAATTTGATCCTAATATAGTAGAGTACTGATATTTAAATACACATATTTAAATTGAACTGATGCACATTGTTACTGCGTTCATTTTGGCATCTTAAATAATTGTTTGCATTATCGGTTACACACAAGTGTTATGTATTAATCATTACTGTAGATTGTAAAAGAGAATcatcaaaataaatatttatatttgaaaattcCTGTAA
>XM_039815135.1
tcacagcagcaacaacaacagcagagagcagaagccagcagGAGCTCGAGAGGCAGTTTTCACCCAGCCTGTGGTCGCACAGGATGTCTGCAGACGACGTGATCAAGGCTCACGTGAAGGCTTTAAAGGAAGGTACAGAGCGTGCCCGTGGCCTGGCTCAAACGTTGCTCAATGTGCCATATggggagggagatggagagaaacTGGATGTCTACATACCCAGCACCAACTCTTTGGATGTCCCCCTTGTCATTTACCTACATGGAGGCTACTGGCAGTTTCTCAGCAAGGAGGAGTCGGGATTCATGGCTGTTCCACTCGTTGATAAAGGTGTAGTGGTGGTTGCTGTCGGCTATGACATCGCCCCTAAAGGCAACATGGACTTGATGGTGTCTCAAGTACGCAGGAGTGTTGTGTCTGTTGTTCAGCAGTATTCTCACATCAGTGGTCTGTACCTGTGTGGCCACTCTGCTGGGGCTCACCTGGCTGCAATGGTTCTCTCCACTGACTGGTCGGAGTACAGCATCACTCCTCAGATCAAAGGTGCTTTTCTTGTCAGTGGCATATATGACCTCCTGCCCATCCTGTCCACCTACGTCAACGAGCCTTTGAAGATGACAGAGGAGGTGGCGGTGAGGAACAGCCCCAGCAAGCTGGTCCCTCAGCTCAaactctcctcctccagctgtcACGTCGTTGTGGCCGTCGCTGAGAACGACTCGCCGGAGTTTCGCAAGCAGTCGGAAGAATACTACAAAACTTTGGAGGCGTCCGGACTTGATGTGACCTTTGAGGACGTGGCGAACACAGACCACTTCAGTATCATTGAGCAACTGGTAGATGGGGAGTATCACCTAACAAAGCTTCTCTTAAAGATGATGGGGAAGAGCTGAGGCGTCGGCCTTTGATTCCTCATCTACTATCAACATACCTCTGTATCAACATACACCTCTGTCCCCCCGATTTATGCATTATTTCAGGTTTGTACAATAGTAAATGTACAATTTCTATCTTGTTGATTGTTCAACCATCAGGTGGCATGGATTGTTTTGACTGCCTAGTAGTTTACTGTATCATTACTTACAGCTGTTTGTTCACTGTAGATACTACTGTCAGAAAAATGTGCTATGAAAACAGTGTGTACCTAAAACCGAGTCACTTCAAGGAGGGTGATTGTAGCAAATGATACTGCTGTTAAACCTGCTCATGTTCACTTGTAAACAGATTATCTAACGAGCATAGTGTACAGTGTAATCATCAGGAAGcaccgttccaccggcacgctGTGAGTTGTAGAGCTGATGGTTAGTTTTGGCATTTCTCCAGTGTTTTGTAAAAGGGTGGGTCTGTCCGTTTGGTGTTTTGTTCTTGTTACAATCTGTTCCACAACTTAAAGTCCATGGGTAGGACAGGAATAGGAGCTCGGAGTACTAATATATCATACGAAGTGAATGTAGCTTTTGATTGTAACCTTCGCAATGCTGATATCTAATCTAAGCAATTGGGCAAAAGGAATTTAATGACCACTATATATTTACACTGTTAATTTGATCCTAATATAGTAGAGTACTGATATTTAAATACACATATTTAAATTGAACTGATGCACATTGTTACTGCGTTCATTTTGGCATCTTAAATAATTGTTTGCATTATCGGTTACACACAAGTGTTATGTATTAATCATTACTGTAGATTGTAAAAGAGAATcatcaaaataaatatttatatttgaaaattcCTGTAA
>XM_039815145.1
tgcgctgcctgcgtctgcgtccgccttgatctcgtgaggtagCCTAAAAATTAAACGTGGGCTCCCccaaaggccacggtatagttcgaacactgctgTTGCAGGAAACGGAGCTCGAGAGGCAGTTTTCACCCAGCCTGTGGTCGCACAGGATGTCTGCAGACGACGTGATCAAGGCTCACGTGAAGGCTTTAAAGGAAGGTACAGAGCGTGCCCGTGGCCTGGCTCAAACGTTGCTCAATGTGCCATATggggagggagatggagagaaacTGGATGTCTACATACCCAGCACCAACTCTTTGGATGTCCCCCTTGTCATTTACCTACATGGAGGCTACTGGCAGTTTCTCAGCAAGGAGGAGTCGGGATTCATGGCTGTTCCACTCGTTGATAAAGGTGTAGTGGTGGTTGCTGTCGGCTATGACATCGCCCCTAAAGGCAACATGGACTTGATGGTGTCTCAAGTACGCAGGAGTGTTGTGTCTGTTGTTCAGCAGTATTCTCACATCAGTGGTCTGTACCTGTGTGGCCACTCTGCTGGGGCTCACCTGGCTGCAATGGTTCTCTCCACTGACTGGTCGGAGTACAGCATCACTCCTCAGATCAAAGGTGCTTTTCTTGTCAGTGGCATATATGACCTCCTGCCCATCCTGTCCACCTACGTCAACGAGCCTTTGAAGATGACAGAGGAGGTGGCGGTGAGGAACAGCCCCAGCAAGCTGGTCCCTCAGCTCAaactctcctcctccagctgtcACGTCGTTGTGGCCGTCGCTGAGAACGACTCGCCGGAGTTTCGCAAGCAGTCGGAAGAATACTACAAAACTTTGGAGGCGTCCGGACTTGATGTGACCTTTGAGGACGTGGCGAACACAGACCACTTCAGTATCATTGAGCAACTGGTAGATGGGGAGTATCACCTAACAAAGCTTCTCTTAAAGATGATGGGGAAGAGCTGAGGCGTCGGCCTTTGATTCCTCATCTACTATCAACATACCTCTGTATCAACATACACCTCTGTCCCCCCGATTTATGCATTATTTCAGGTTTGTACAATAGTAAATGTACAATTTCTATCTTGTTGATTGTTCAACCATCAGGTGGCATGGATTGTTTTGACTGCCTAGTAGTTTACTGTATCATTACTTACAGCTGTTTGTTCACTGTAGATACTACTGTCAGAAAAATGTGCTATGAAAACAGTGTGTACCTAAAACCGAGTCACTTCAAGGAGGGTGATTGTAGCAAATGATACTGCTGTTAAACCTGCTCATGTTCACTTGTAAACAGATTATCTAACGAGCATAGTGTACAGTGTAATCATCAGGAAGcaccgttccaccggcacgctGTGAGTTGTAGAGCTGATGGTTAGTTTTGGCATTTCTCCAGTGTTTTGTAAAAGGGTGGGTCTGTCCGTTTGGTGTTTTGTTCTTGTTACAATCTGTTCCACAACTTAAAGTCCATGGGTAGGACAGGAATAGGAGCTCGGAGTACTAATATATCATACGAAGTGAATGTAGCTTTTGATTGTAACCTTCGCAATGCTGATATCTAATCTAAGCAATTGGGCAAAAGGAATTTAATGACCACTATATATTTACACTGTTAATTTGATCCTAATATAGTAGAGTACTGATATTTAAATACACATATTTAAATTGAACTGATGCACATTGTTACTGCGTTCATTTTGGCATCTTAAATAATTGTTTGCATTATCGGTTACACACAAGTGTTATGTATTAATCATTACTGTAGATTGTAAAAGAGAATcatcaaaataaatatttatatttgaaaattcCTGTAA

Function

symbol description
afmid Predicted to enable hydrolase activity. Predicted to be involved in tryptophan catabolic process to kynurenine. Predicted to act upstream of or within tryptophan catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Orthologous to human AFMID (arylformamidase).

NR:

description
PREDICTED: kynurenine formamidase

GO:

id name namespace
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0004061 arylformamidase activity molecular_function

KEGG:

id description
K01432 AFMID; arylformamidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815126.1 True 2027 mRNA 0.44 11 16907096 16921053
XM_039815135.1 False 1747 mRNA 0.45 11 16907096 16924598
XM_039815145.1 False 1816 mRNA 0.45 11 16907096 16914026

Neighbor

gene id symbol gene type direction distance location
cant1b LOC104922273,LOC104950180 coding downstream 2428 16895705 ~ 16904668 (-)
ldb1b ldb1,LOC104963201,LOC108444470,LOC104922276,LOC103353370,LOC103150493,LOC100706951,LOC108270891,LOC101479469,LOC107090769,LOC106518772 coding downstream 33606 16843787 ~ 16873490 (-)
armh3 lg6h10orf76,cunh10orf76 coding downstream 67374 16815833 ~ 16839722 (-)
LOC120567461 LOC104963199,LOC100697187,LOC102310533,LOC101478713,LOC102778966 coding downstream 97770 16795409 ~ 16809326 (-)
hap1 LOC100707478,LOC101477593,LOC102309093,LOC102207703 coding downstream 155693 16726000 ~ 16751403 (-)
syngr2b syngr2,LOC107090770 coding upstream 12203 16936801 ~ 16945862 (-)
LOC120556225 NA coding upstream 22268 16946866 ~ 16957332 (-)
tmc8 LOC103356194 coding upstream 33014 16957612 ~ 16966225 (-)
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding upstream 60796 16985394 ~ 16995641 (-)
npb npb coding upstream 228324 17152922 ~ 17154504 (-)
G5140 LOC103362533 non-coding downstream 64093 16762368 ~ 16843003 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding downstream 255570 16649045 ~ 16651526 (-)
G5079 mettl26 non-coding downstream 554628 16350067 ~ 16352468 (-)
G5081 NA non-coding downstream 557113 16348266 ~ 16349983 (-)
G5069 NA non-coding downstream 581250 16325521 ~ 16325846 (-)
G5202 NA non-coding upstream 43311 16967909 ~ 16972243 (-)
G5242 NA non-coding upstream 127030 17051628 ~ 17051857 (-)
G5261 NA non-coding upstream 135563 17060161 ~ 17060543 (-)
G5264 NA non-coding upstream 137312 17061910 ~ 17062119 (-)
G5265 NA non-coding upstream 138470 17063068 ~ 17065526 (-)
LOC120558720 NA other downstream 559174 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1221457 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2002867 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2187994 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2864586 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 487455 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 786041 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 892909 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 911306 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 955270 17879868 ~ 17881759 (-)

Expression


Co-expression Network