syngr2b (syngr2,LOC107090770)


Basic Information

Item Value
gene id syngr2b
gene name syngr2,LOC107090770
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16936801 ~ 16945862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815158.1
CTCTCCTCTGGGTGGCTCTCGTCTCGCCTTCGTTCGTTGGGTGTAGCAGCAGGACAGGAGGTGGCAGCAGTTAAGTTAAGTGAAGTGAAGTTAAACTGGCAGGCTGTGCGCACGGTGAGCTCCGGAGGATCTGCTGAACGGGAGAGACATGGAGGAGACGGGCGGTGCAAGTGCGTACGGGGCTTCGCTCGCAGGAGGAAGCTTCGACTTCTACAAGTTTATCCGACAGCCGCAAACCATCGTGCGGATACTCAGCTGGATATTTGCCCTGGTGGTGTTTGCTACCATCACATCAGAGGGATACGTCAACTCTCCCCACAGTGAAGAGGTAAAGTGCATCTTTAACCAGAATGACTCGGCATGTCATTACGCTATTGGCATCGGGGTGATTGCCTTCCTGGCATGTGTGGCCTTCCTGATGTTGGACGTTTACTTGCCTTTTATGAGCAGCGCGCAGGAAAGGAAGTACGCTGTCATGGCAGACCTGGGATTCTCAGggGCGTGGAGCTTCCtgtggtttgtgtgtttctgcctGTTGGCCAGTCAGTGGGCTAAAACTCATGATGTGAATGGTATCCCAGAGGACGCTGCACGAGCCACTGTGGCCTTCTCATTCTTCTCTATCGCCACTTGGGGAATCCTTACCTACTTTGCCCTCAGCCGCTTTCGCCGCGGTGTTAATGAAGTTTCCATCCCAACGTACACCGAGGCGCCACCAGATCACCACGCCCCCTACCCTCCGACCTACGCCCCCACCTCCTACAACCCCACCACCTACACCCCTACCACTTACACAGCCTATCCCAGCAGTGTGCCCGACATGCACCAGCAGCCTCCCTTCACCCCAAACCCCCAGCCGCAAGgagacgccggctaccagccgCCCAGCTACTGAGACAAAGGGAGGTCACATGGACGAAGTGGTGTTCGAGATCATCTGTTGGTACACTGATTGTAGTTGCACTGCACAGACCCAGAGCTATATCATATTGATGTGGATTTACATTTGATTTAACATACTTTTCCAAGTGTCCGATTTAAGAGCCTGAGCAGTGCAACTGCAAGTAAGAGACGAGGGACACTGCTGTTTACGTCAAGTGGTCAGATTTTAAGACATCACGCTGACTGTAAGGATTAGCGCTGATGATTGGGTAATCTGACCTTAGACCTGTGTGCAAAgatactactttttttttttttacctcaaatgTGCTGAGCCTGAAGGGGAGAGGTTAAAGGTCACAGAAATGTGATGTGAAGAATACCTGTGATGGCTCTAATCAGAGTGGGAGAAGCCAACACCTAATGTGTTtgcctcctctttcctctctgttgGAACCTGAGTGTGCATTTGTACATAGATTTCACTGCAAAGCTGCCATTTTAATGGTCGTATGTGCCTGACTTTCTTTTCTTATTTGGGTTAGTTTATCTTGAGGACCTTTAAACAGTGTAAGATGTATTAAATTAACACATGATTTTGTGGGAGTAGAGCACAGTGGGAAAAGATTACTATAAAGCCAAATGGCCCccttttgatttagttttttgaaaaaaacgtgGGTTCTGTACTGATTATGCAGTCAAGTTTCTTAGCCATATAACCATAAAATCATAAAATCACCCCTGAAAGAAAGATTTGCAACCTTTGTGCTCAAGTAAAATTGCTTCTGTGTTCGCCATCCCAACTAGCTATGTTTTTAAGACGACTCTAATCAAAATGTGTTGTTGATGGTGACTTGggaaaccataaaaaaaaactccattacTTCCACTGTGGCCATGGTAGATGcaacaaatattcaaaaaacaaatgtttgtaAAAGTGGGTTACATGTGCCAATCTGTAGAGGCATTTATTGGACGTTCATAGGTGGTGTTGCCCTTTTAAACTTGTAGCTaacattcagacagacaggagggggggggagcaTGTAGATAACTATGCACTTGTTGAACAGGTCTATCCATCGAGCATGTCCTCACACTGAAGAGTAACTTATTAACTACCAGAAACCAGGCTCCCTCTTCAGCCTGCAAACACTTCCTCCAAAGTCTTTGTGACATTTAGTTTTCTGAACACTGATGTTTATCTCTTCAATGTTTATCAGAGTGCAGCGGGTATGTCTTGACCATTGACAGATTGACACCTCAGCCTGCAACGGTGAGAATCACACACCTGTCCTTAGAAAGACTACTGATTTACTTTGTCGCTTCGTGCCTGACAGTAATCTGTTTGTCAGTTCAACCCCTCAGCTGCCTTGTCGGGATCCAGTTATGGCTGTTGTAGCTAAAGTGGCACTCAAAGGTTAGCCCGAGATAAGATTTTGGTAATTGTTGCTCAGGTGTAAACTGACTTGAGATCTGCAAATGACAAGACCACAAACTGAATGTggatatatttattaaacacaaTGCCATTGTGGTACCACGTTGAATACATTTGTACAAGTATAAAGACATCGCTGATTAAAATGTAGAAAACGCGTGCATAATTTACTGAagggatatacagtatatatgcaaAAACACTGCTGTTGACTTGTCATTTGTGCCACAGTGAGAGAAATTAAAACTTTTGGGGAAGGAAGTGTGCCGTGATTCAAGTTATATTTAGGTGAAACAGCTGTGCATCACAGCTGCCCTTGCTGCCATGCCTGCTTGATTTTTGAAAGGCTGATTAATCTGCTCTTCAGTTAACATTTAAAATCAATGTATCCATCTGCTGGTGAAGACTGCCACTTGTCATTAATTTAAAATCTATCAGCTGACAGTGAATCTCTAAGTTGCCTTTAAATTTAATGTGTCGCAAAATAGTATTGTAATGGTAACACAAGGCTTACATGTAATATGTGATGCATATTTTATTTGCAAAGTAAATTAACTTGATATTTTGTAAGATTGATTTATATTTCTTTAAGgtccatgttttaaatgtgagaCTAGAATAGGTTTTATAAAAACTGTCGCAAAATAGTGGTCAGACTTTGGTTGGCttgatttgtttttctattGTTTCCAAGTATGTTTTTTGACAGTTGCCATGTGCCCTTTTGCTTTCATCTTTCGGTCACTGTCCTGTCACAGTGTCAGAAGCACAACAGTGATTTACTGGAGACCTTTTGTTTATAGAATAAAACCATTCACAGGATGTTCAGGA

Function

symbol description
syngr2 Predicted to be involved in regulated exocytosis and synaptic vesicle membrane organization. Predicted to act upstream of or within protein targeting. Located in extracellular exosome.

NR:

description
PREDICTED: synaptogyrin-2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815158.1 True 3160 mRNA 0.44 4 16936801 16945862

Neighbor

gene id symbol gene type direction distance location
afmid afmid,LOC102792082 coding downstream 12203 16907096 ~ 16924598 (-)
cant1b LOC104922273,LOC104950180 coding downstream 32133 16895705 ~ 16904668 (-)
ldb1b ldb1,LOC104963201,LOC108444470,LOC104922276,LOC103353370,LOC103150493,LOC100706951,LOC108270891,LOC101479469,LOC107090769,LOC106518772 coding downstream 63311 16843787 ~ 16873490 (-)
armh3 lg6h10orf76,cunh10orf76 coding downstream 97079 16815833 ~ 16839722 (-)
LOC120567461 LOC104963199,LOC100697187,LOC102310533,LOC101478713,LOC102778966 coding downstream 127475 16795409 ~ 16809326 (-)
LOC120556225 NA coding upstream 1004 16946866 ~ 16957332 (-)
tmc8 LOC103356194 coding upstream 11750 16957612 ~ 16966225 (-)
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding upstream 39532 16985394 ~ 16995641 (-)
npb npb coding upstream 207060 17152922 ~ 17154504 (-)
sgsh sgsh coding upstream 209869 17155731 ~ 17161156 (-)
LOC120568012 NA non-coding downstream 16075 16917074 ~ 16920726 (-)
G5140 LOC103362533 non-coding downstream 93798 16762368 ~ 16843003 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding downstream 285275 16649045 ~ 16651526 (-)
G5079 mettl26 non-coding downstream 584333 16350067 ~ 16352468 (-)
G5081 NA non-coding downstream 586818 16348266 ~ 16349983 (-)
G5202 NA non-coding upstream 22047 16967909 ~ 16972243 (-)
G5242 NA non-coding upstream 105766 17051628 ~ 17051857 (-)
G5261 NA non-coding upstream 114299 17060161 ~ 17060543 (-)
G5264 NA non-coding upstream 116048 17061910 ~ 17062119 (-)
G5265 NA non-coding upstream 117206 17063068 ~ 17065526 (-)
LOC120558720 NA other downstream 588879 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1251162 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2032572 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2217699 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2894291 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 466191 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 764777 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 871645 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 890042 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 934006 17879868 ~ 17881759 (-)

Expression


Co-expression Network