ift27 (ift27,LOC102778458)


Basic Information

Item Value
gene id ift27
gene name ift27,LOC102778458
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12439942 ~ 12453356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815557.1
CAATGAAACGCCTTTGTGGCCGGTTGCTAAGAGACGGGTTGTGTCCATGTTGCCGTCTGCTGAGGATCAGAAGATATTTAGCTAGATGAGCCAGCTAAAAACAGAAAGTAGAGGTTGTTTTGCATCATTAATAAAACAAGAGCGTTTACTTACCGTGTCTGGAAGTTCCCCACTGTAATGGTGAAGTTGAGGGCGAGATGTCTGCTTGTCGgagaTGCTGCAGTAGGGAAAAGTGCCCTTTGCCATATGTTCCACAGTGACCGCACTCTCTTCCAGAAGAACTACAGCATGACAACCGGAGTGGAGCTGCTGATAAAATGTGTCAACATCCCAGAGACCACCGACAGTGTGGAGCTCTACATCATAGACTCTGCAGGGAAGCAGGCATTAGTGGAAGCCTGCGAGAAAATGTGGGGTGAGCTGTCGCTGCTGTGCCTGGTTTTTGACCTGACCAGTGAGCAGTCGTTTGCCAACTGCAGCCACTGGATGGAGAGAGTTCGTGCTCACTGCCAAGGCCTCCACATTCCAGGTGTCTTGGTGGGCAACAAGTCGGACCTGTCTGCTAGAAGGGAGGTCCAGGCGTCCGTGGCCCAGGAATGGGCTCAAAGCCAGGGTTTGGAGTACCACGAGACATCAGCTAAGGAGATGGAGAACTGTGACGCGGCGCTCCTCGGTTTAGCCCGGGCCTTCCACTCACTCTACCAGGAACGTCGCGAGACCATCCAGAACCTGAGTCCAGGCTAGAGTCTTccccagtcacacacacacacacaaacacacacacacacacaccttgattCAAAGAAATCCTATGTTCTTTGGTACTGCCCGTGCTGCAGGCCCTGCAGAAAAAGGCTTGTTCAGAATGATATTTTGATGTGACCGTGATTAAAGTTGTTTTTCTGTGATAA
>XM_039815565.1
CAATGAAACGCCTTTGTGGCCGGTTGCTAAGAGACGGGTTGTGTCCATGTTGCCGTCTGCTGAGGATCAGAAGATATTTAGCTAGATGAGCCAGCTAAAAACAGAAAGTAGAGGTTGTTTTGCATCATTAATAAAACAAGAGCGTTTACTTACCGTGTCTGGAAGTTCCCCACTGTAATGGTGAAGTTGAGGGCGAGATGTCTGCTTGTCGGTAAGGTTTTgagaTGCTGCAGTAGGGAAAAGTGCCCTTTGCCATATGTTCCACAGTGACCGCACTCTCTTCCAGAAGAACTACAGCATGACAACCGGAGTGGAGCTGCTGATAAAATGTGTCAACATCCCAGAGACCACCGACAGTGTGGAGCTCTACATCATAGACTCTGCAGGGAAGCAGGCATTAGTGGAAGCCTGCGAGAAAATGTGGGGTGAGCTGTCGCTGCTGTGCCTGGTTTTTGACCTGACCAGTGAGCAGTCGTTTGCCAACTGCAGCCACTGGATGGAGAGAGTTCGTGCTCACTGCCAAGGCCTCCACATTCCAGGTGTCTTGGTGGGCAACAAGTCGGACCTGTCTGCTAGAAGGGAGGTCCAGGCGTCCGTGGCCCAGGAATGGGCTCAAAGCCAGGGTTTGGAGTACCACGAGACATCAGCTAAGGAGATGGAGAACTGTGACGCGGCGCTCCTCGGTTTAGCCCGGGCCTTCCACTCACTCTACCAGGAACGTCGCGAGACCATCCAGAACCTGAGTCCAGGCTAGAGTCTTccccagtcacacacacacacacaaacacacacacacacacaccttgattCAAAGAAATCCTATGTTCTTTGGTACTGCCCGTGCTGCAGGCCCTGCAGAAAAAGGCTTGTTCAGAATGATATTTTGATGTGACCGTGATTAAAGTTGTTTTTCTGTGATAA

Function

symbol description
ift27 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within cilium assembly; kidney development; and regulation of melanosome transport. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 19. Orthologous to human IFT27 (intraflagellar transport 27).

NR:

description
PREDICTED: intraflagellar transport protein 27 homolog

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0001822 kidney development biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07934 IFT27, RAYL, RABL4; intraflagellar transport protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815557.1 False 911 mRNA 0.51 7 12439942 12453356
XM_039815565.1 True 921 mRNA 0.51 7 12439942 12453356

Neighbor

gene id symbol gene type direction distance location
LOC120565820 cuta,LOC103356700,LOC102777976 coding downstream 111306 12320596 ~ 12328636 (-)
LOC120567055 NA coding downstream 136811 12300865 ~ 12303131 (-)
LOC120562870 NA coding downstream 162858 12274686 ~ 12277084 (-)
LOC120562891 NA coding downstream 198852 12237418 ~ 12241090 (-)
LOC120562884 NA coding downstream 217764 12217613 ~ 12222178 (-)
LOC120543530 tmprss6 coding upstream 235572 12688928 ~ 12703781 (-)
LOC120561143 NA coding upstream 250826 12704182 ~ 12720442 (-)
LOC120561165 NA coding upstream 274545 12727901 ~ 12751429 (-)
LOC120565245 mpst,LOC102779789 coding upstream 299006 12752362 ~ 12755136 (-)
LOC120565993 LOC103371372,LOC104925466 coding upstream 346052 12799408 ~ 12802826 (-)
G3828 NA non-coding downstream 2540 12435552 ~ 12437402 (-)
G3821 NA non-coding downstream 11299 12428320 ~ 12428643 (-)
G3783 NA non-coding downstream 175936 12215455 ~ 12264006 (-)
G3781 NA non-coding downstream 184139 12207348 ~ 12255803 (-)
G3780 NA non-coding downstream 188102 12206851 ~ 12251840 (-)
G3847 NA non-coding upstream 13476 12466832 ~ 12496094 (-)
LOC120558164 NA non-coding upstream 60051 12513407 ~ 12515106 (-)
G3857 NA non-coding upstream 102591 12555947 ~ 12616154 (-)
G3858 mgat3,LOC103374702,LOC103375514 non-coding upstream 148934 12602290 ~ 12607359 (-)
G3914 NA non-coding upstream 234485 12687841 ~ 12688294 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other downstream 1446741 10966362 ~ 10993201 (-)
G3586 LOC104950333 other downstream 1534707 10899558 ~ 10905235 (-)
LOC120559237 LOC103359075 other downstream 2228638 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 2397938 9840590 ~ 10042004 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 2872097 9525261 ~ 9567845 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 188657 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 351146 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 406928 12860284 ~ 12860355 (-)
trnac-gca_1 NA other upstream 408338 12861694 ~ 12861765 (-)
trnac-gca_2 NA other upstream 409174 12862530 ~ 12862601 (-)

Expression


Co-expression Network