nsmce1 (nsmce1,LOC102778604)


Basic Information

Item Value
gene id nsmce1
gene name nsmce1,LOC102778604
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19703430 ~ 19713643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816186.1
AGGCACACAAGCACACTGGCCGATGGTAATTCACATATGAGACTACAACGCACACAACTACCGGAAgtcgaagaagaagaagaagcagcagcaggaggaaaaAGAAGGCGCGCATTGCAGAAGGATCAGTCCAGAGACATGGCACGACCGATGGAAGACAGCCATCGACGCTTCCTACAGACCATGATGGCCAATGGCATCGTTGATGAACAAAGTGCAAGGACGCTCTATCAATATTGTTGTGAAACCCACAACACACAGCACACCCCAGATAAACTGGATGATTTCATTGAAACCATCAACTCAAAACTGCAGCCCATGTTCATGCAAATTAGAAAAGGGATGTCTGAAGACAACGGTCACCAGTTCTACGCCTTGGTGAACATGGCTGAGACTGATGTCACCAGGATGTCGTCAGATTATGCTGACAATGAGCTGGAGCTGTTCAGAAAAACGATGGACCTGATCGTGTGCTCTGAGAATGGCAAGGCCTCCTCCACTGATATTCTGAACAGCGCCGACACCCTGACCACCAAAAAGCTGAAGAAGAGCGAGACCGAGCACCTCTTGAACCGACTCGTGCATGACAAATGGCTCAATGAGAAACGGGGTGAATACACTTTGTCCACCAGATGTATTATAGAGATGGAGCCATACATTCGCTCAATGTATCAGGACCAGGTCAAAGTGTGCCACATCTGTCGCAACATCGCTTTCCAGtgccaAATTTGTGAGAAGCCTACATGTGGTATAAAAATACACAACCCCTGTGTGGCCAGATATTTCAAAGGAAGAGCAGAGCCGAGGTGTCCAGCTTGTGATGACTTTTGGCCACATGAAATCCCTGAAGTCAGACGGTCCCGGTCTCAGTCCAAACAGTGAGGACTTCAgcatcaaatgtgttttttttgttgttttttttgcttgttaaagttgtttagtattttttaacttaacttTGTAATAAACCAAACTGTTAATATAAA
>XM_039816195.1
CGATGGTAATTCACATATGAGACTACAACGCACACAACTACCGGAAgtcgaagaagaagaagaagcagcagcaggaggaaaaAGAAGGCGCGCATTGCAGAAGGGTAACTGATCAGTCCAGAGACATGGCACGACCGATGGAAGACAGCCATCGACGCTTCCTACAGACCATGATGGCCAATGGCATCGTTGATGAACAAAGTGCAAGGACGCTCTATCAATATTGTTGTGAAACCCACAACACACAGCACACCCCAGATAAACTGGATGATTTCATTGAAACCATCAACTCAAAACTGCAGCCCATGTTCATGCAAATTAGAAAAGGGATGTCTGAAGACAACGGTCACCAGTTCTACGCCTTGGTGAACATGGCTGAGACTGATGTCACCAGGATGTCGTCAGATTATGCTGACAATGAGCTGGAGCTGTTCAGAAAAACGATGGACCTGATCGTGTGCTCTGAGAATGGCAAGGCCTCCTCCACTGATATTCTGAACAGCGCCGACACCCTGACCACCAAAAAGCTGAAGAAGAGCGAGACCGAGCACCTCTTGAACCGACTCGTGCATGACAAATGGCTCAATGAGAAACGGGGTGAATACACTTTGTCCACCAGATGTATTATAGAGATGGAGCCATACATTCGCTCAATGTATCAGGACCAGGTCAAAGTGTGCCACATCTGTCGCAACATCGCTTTCCAGtgccaAATTTGTGAGAAGCCTACATGTGGTATAAAAATACACAACCCCTGTGTGGCCAGATATTTCAAAGGAAGAGCAGAGCCGAGGTGTCCAGCTTGTGATGACTTTTGGCCACATGAAATCCCTGAAGTCAGACGGTCCCGGTCTCAGTCCAAACAGTGAGGACTTCAgcatcaaatgtgttttttttgttgttttttttgcttgttaaagttgtttagtattttttaacttaacttTGTAATAAACCAAACTGTTAATATAAA
>XM_039816204.1
TGTTCACGTCTTATTATTTAACTCTGACTTATTTTGACTTTAGAGGCTCGTTTCTGCTAAGTATTCAATCATTTAAGCGGCCGAAAAACGTTAAAGTGAACCGTTAACCGACAAAATCTCTACTTTGGCACAGATCAGTCCAGAGACATGGCACGACCGATGGAAGACAGCCATCGACGCTTCCTACAGACCATGATGGCCAATGGCATCGTTGATGAACAAAGTGCAAGGACGCTCTATCAATATTGTTGTGAAACCCACAACACACAGCACACCCCAGATAAACTGGATGATTTCATTGAAACCATCAACTCAAAACTGCAGCCCATGTTCATGCAAATTAGAAAAGGGATGTCTGAAGACAACGGTCACCAGTTCTACGCCTTGGTGAACATGGCTGAGACTGATGTCACCAGGATGTCGTCAGATTATGCTGACAATGAGCTGGAGCTGTTCAGAAAAACGATGGACCTGATCGTGTGCTCTGAGAATGGCAAGGCCTCCTCCACTGATATTCTGAACAGCGCCGACACCCTGACCACCAAAAAGCTGAAGAAGAGCGAGACCGAGCACCTCTTGAACCGACTCGTGCATGACAAATGGCTCAATGAGAAACGGGGTGAATACACTTTGTCCACCAGATGTATTATAGAGATGGAGCCATACATTCGCTCAATGTATCAGGACCAGGTCAAAGTGTGCCACATCTGTCGCAACATCGCTTTCCAGtgccaAATTTGTGAGAAGCCTACATGTGGTATAAAAATACACAACCCCTGTGTGGCCAGATATTTCAAAGGAAGAGCAGAGCCGAGGTGTCCAGCTTGTGATGACTTTTGGCCACATGAAATCCCTGAAGTCAGACGGTCCCGGTCTCAGTCCAAACAGTGAGGACTTCAgcatcaaatgtgttttttttgttgttttttttgcttgttaaagttgtttagtattttttaacttaacttTGTAATAAACCAAACTGTTAATATAAA

Function

symbol description
nsmce1 Predicted to enable protein dimerization activity and ubiquitin protein ligase activity. Predicted to be involved in double-strand break repair via homologous recombination; positive regulation of response to DNA damage stimulus; and postreplication repair. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Orthologous to human NSMCE1 (NSE1 homolog, SMC5-SMC6 complex component).

NR:

description
non-structural maintenance of chromosomes element 1 homolog

GO: NA

KEGG:

id description
K22817 NSMCE1, NSE1; non-structural maintenance of chromosomes element 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816186.1 False 986 mRNA 0.46 8 19703430 19713643
XM_039816195.1 False 973 mRNA 0.45 8 19703430 19713623
XM_039816204.1 True 995 mRNA 0.44 8 19703430 19713496

Neighbor

gene id symbol gene type direction distance location
caly LOC103369152,LOC102207078,LOC102778125,LOC102077312,LOC102295693 coding downstream 13185 19680664 ~ 19690245 (-)
LOC120574931 LOC103369153,LOC102777830,LOC104922226,LOC101476272 coding downstream 55527 19645501 ~ 19647903 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding downstream 59337 19640531 ~ 19644093 (-)
pnpla6 pnpla6,LOC107083430 coding downstream 63557 19604429 ~ 19639873 (-)
cusr NA coding downstream 560767 19121033 ~ 19142663 (-)
vps37a vps37a coding upstream 1059 19714702 ~ 19723746 (-)
LOC120569705 NA coding upstream 13478 19727121 ~ 19727332 (-)
LOC120569594 NA coding upstream 14453 19728096 ~ 19728310 (-)
LOC120569665 NA coding upstream 15424 19729067 ~ 19729281 (-)
LOC120569683 NA coding upstream 16385 19730028 ~ 19730242 (-)
G6093 NA non-coding downstream 154272 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 207302 19493882 ~ 19496128 (-)
G6081 pdcd4,LOC104958203 non-coding downstream 215411 19481135 ~ 19488019 (-)
G6052 smc3 non-coding downstream 309163 19387327 ~ 19394267 (-)
G6025 NA non-coding downstream 439703 19261235 ~ 19263727 (-)
G6131 NA non-coding upstream 37958 19751601 ~ 19751818 (-)
G6233 NA non-coding upstream 125511 19839154 ~ 19841715 (-)
G6242 NA non-coding upstream 203473 19917116 ~ 19920280 (-)
G6264 NA non-coding upstream 468396 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 482635 20196278 ~ 20203695 (-)
G6084 NA other downstream 157503 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 666349 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 721112 18971970 ~ 18982318 (-)
G5930 LOC102307335,LOC101466373 other downstream 813210 18884968 ~ 18890220 (-)
LOC120556582 NA other downstream 1821671 17879868 ~ 17881759 (-)
LOC120569510 NA other upstream 51250 19764893 ~ 19765387 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other upstream 52854 19766497 ~ 19796522 (-)
spink4 NA other upstream 329120 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 473638 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1849448 21563091 ~ 21569059 (-)

Expression


Co-expression Network