LOC120568624 (LOC107104464)


Basic Information

Item Value
gene id LOC120568624
gene name LOC107104464
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13408733 ~ 13415673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816252.1
GTCACACACGCACTTTCCCCCCAGGCTAATGTCACTGCTGACCTCCAAACACGTTAGCCTACGTCTCACACTTGACAGCATTCTATCATGGTGCTCCAGAAAGCCCCCGCGGACGGTGCTGTCCGCCCAGCGGGCCCTGCCTCTGTTATCACACTCACCCTCCGGGTCTTCATCGTGTCAGCTCTCCGTCTCCGAAGAACACTCAAGACGGAGGTCCGCGTCCTGTTGTCCATGCTGCCCGCGTCTCCGCTTAGATCACGGCGACTCCTGGGGTTATTCTCCGCCGAGGTGCATGGTGTCACTGCTTCACATGAacTACTTGCTGTGAACCTGTGTCATCAGAAGAAGCCTTTGTATCACTCCTTGTTCAAGTTCCTGCTCCTGCTTTGTCTGGTGCTCTTCATCTTGTGTTACGCTCCGTCAAGCAGCTCTCTGTCATGGTTGCAGAGCTTTCCACTCCGTGAGCACTACCAGAGGTTTTTCAATCGGACCAATCAGGTTAATCTACCTCCTCCTTATCGTGTCCATCCAAAACACAGAGGTAAACCAAATGAAATCTATGAAGCCACAGAATCCCCTGCTGTGCCTCCTACAGGTACTCAGTTCCATCAAGCCCACCCACACAACTACCACTTTATCATGGATAACAAAGAGGTGTGCAAGACCAAGACCCCTTTCTTGGTCCTGATGGTTCCAGTGGCACCAACAAACGTGGAAGCTCGGGACGCCATCCGGCAGACGTGGGGCAATGACAGCCTGGTTCGGGGCGAGGTGGTGCTAACTCTGTTCATGCTGGGCCTCTCTGGAGGACCTGCTGCCGAGCAGCTGCAGGAGACGCTGAAACAGGAGAACCTACAGCACCATGACTTGATCCAGAGTGACTTCATGGACACTTACCTCAATCTGACCATCAAAACCATGGTCATCATGGACTGGCTGGCCACACGCTGCCGCACAGCGGCGTACGCCATGAAGATTGATTCGGACATGTTTCTGAACATTGACAATCTAGTGATGATGCTACAGAAGCCAGGCATCCCCAAGCTGAACTACCTGACCGGGATGCTTATGTGGAACAGGCCGGTCATCCGTTCAAAGAACTCCAAGTGGTACGTCCCTGAGGAGATGTACCCAGATCCCCAATACCCGACCTACACGCTGGGCATGGGATATGTCTTCTCCAACGATCTTCCAGAGAAATTTGTGGAGATCTCAAAATCAATCAAACCCTTTAACATAGAGGACGCTTATATTGGAATGTGCATGAAGAAGCTAGGACTTGGGCCAACATCACCCCCAAATCCCTCCCAGTTCAAGGCCTATAACAAAAGATATGATCGCTGTGAATACTCCAAGATCATCACCTACATCCTTGGCTCTTCACAAGAGTTGGTGAAATACTGGACAGACTTGAAGAAGCCTGAACCACCTTGTTAAGACCATGACTACTACAGATGCAATGAGAAATCCCACGGGTGAAAGGGATTTGGTGGCAGGGAATTTGATATTTATGGATTTCTGTACTGATCTAGGATTCCCATGCCATCCTCATTTGAGAAATAAGCATTGTGATCACCCATGTGGAAGAGTGACAGGGGTTCTTGAAAAATGGCATTATGGACATGCTGTATAAATGTAGCAAATAAACCAGACAAATGAAGTTCACTTGAATCTAATGCAACAGatggaggtttaaaaaaagtctaTGCAACTATTAAGAGGTAAGAAAAGCTTTCAACGTGTTTGCTATACATTCAGGgtacacattacattttgagtgaCAATGTTGAACTCAACTGTGTCTGTTCACAATGAACACTCCTCAGGGTACCTCAAGTAACAAATAAGCCATAGACCCCTGACAGAACGGTGTAAAAGTTTTTGTCTGGTAGtggatgtcatttttttttttctaattaaataatggaaaaaaaacaacaactattgAACACCCCTGAAACTAATTTATACGTGtcacaaaaacttgaaaaaatattgcactttttgcTATGTTGTCTGAATGTAAATTCAATGTAATGTGAGTTTAATGAGttttcattgttgttgttttcagagCCAAATCCTCTAACGTATTCTGGTATCAGCTAGAAGGGGTTGCGAGAGGTTTCATGAACTTGAACAGTAATATTATCATGCAGCCCAGTGTGGTTCTGAACAGCCTAGTTTCCCATCTTTGAGGATCCTGATGTGTGGTCCAGGAACCCCTTGAGGTCCTTAacgcttgtgttgtcttcctgacgaccatgcaacttttagtttttctaggtccaaataaataaattcaatgTTTTGGTCATCTTTCAA
>XM_039816259.1
CACCATGCGTGGAAGTTATGGTTAGTAATAATTCATGGATGAAGGGAATTAAAAACGATAGGGAAGGATTGAGGGAATACGAAAGACCGGGTTGCGGCAGTCATGGAGGATAAAAGGTCTGGCTCAGGTGGGAATTGGCTAAAAAGacTACTTGCTGTGAACCTGTGTCATCAGAAGAAGCCTTTGTATCACTCCTTGTTCAAGTTCCTGCTCCTGCTTTGTCTGGTGCTCTTCATCTTGTGTTACGCTCCGTCAAGCAGCTCTCTGTCATGGTTGCAGAGCTTTCCACTCCGTGAGCACTACCAGAGGTTTTTCAATCGGACCAATCAGGTTAATCTACCTCCTCCTTATCGTGTCCATCCAAAACACAGAGGTAAACCAAATGAAATCTATGAAGCCACAGAATCCCCTGCTGTGCCTCCTACAGGTACTCAGTTCCATCAAGCCCACCCACACAACTACCACTTTATCATGGATAACAAAGAGGTGTGCAAGACCAAGACCCCTTTCTTGGTCCTGATGGTTCCAGTGGCACCAACAAACGTGGAAGCTCGGGACGCCATCCGGCAGACGTGGGGCAATGACAGCCTGGTTCGGGGCGAGGTGGTGCTAACTCTGTTCATGCTGGGCCTCTCTGGAGGACCTGCTGCCGAGCAGCTGCAGGAGACGCTGAAACAGGAGAACCTACAGCACCATGACTTGATCCAGAGTGACTTCATGGACACTTACCTCAATCTGACCATCAAAACCATGGTCATCATGGACTGGCTGGCCACACGCTGCCGCACAGCGGCGTACGCCATGAAGATTGATTCGGACATGTTTCTGAACATTGACAATCTAGTGATGATGCTACAGAAGCCAGGCATCCCCAAGCTGAACTACCTGACCGGGATGCTTATGTGGAACAGGCCGGTCATCCGTTCAAAGAACTCCAAGTGGTACGTCCCTGAGGAGATGTACCCAGATCCCCAATACCCGACCTACACGCTGGGCATGGGATATGTCTTCTCCAACGATCTTCCAGAGAAATTTGTGGAGATCTCAAAATCAATCAAACCCTTTAACATAGAGGACGCTTATATTGGAATGTGCATGAAGAAGCTAGGACTTGGGCCAACATCACCCCCAAATCCCTCCCAGTTCAAGGCCTATAACAAAAGATATGATCGCTGTGAATACTCCAAGATCATCACCTACATCCTTGGCTCTTCACAAGAGTTGGTGAAATACTGGACAGACTTGAAGAAGCCTGAACCACCTTGTTAAGACCATGACTACTACAGATGCAATGAGAAATCCCACGGGTGAAAGGGATTTGGTGGCAGGGAATTTGATATTTATGGATTTCTGTACTGATCTAGGATTCCCATGCCATCCTCATTTGAGAAATAAGCATTGTGATCACCCATGTGGAAGAGTGACAGGGGTTCTTGAAAAATGGCATTATGGACATGCTGTATAAATGTAGCAAATAAACCAGACAAATGAAGTTCACTTGAATCTAATGCAACAGatggaggtttaaaaaaagtctaTGCAACTATTAAGAGGTAAGAAAAGCTTTCAACGTGTTTGCTATACATTCAGGgtacacattacattttgagtgaCAATGTTGAACTCAACTGTGTCTGTTCACAATGAACACTCCTCAGGGTACCTCAAGTAACAAATAAGCCATAGACCCCTGACAGAACGGTGTAAAAGTTTTTGTCTGGTAGtggatgtcatttttttttttctaattaaataatggaaaaaaaacaacaactattgAACACCCCTGAAACTAATTTATACGTGtcacaaaaacttgaaaaaatattgcactttttgcTATGTTGTCTGAATGTAAATTCAATGTAATGTGAGTTTAATGAGttttcattgttgttgttttcagagCCAAATCCTCTAACGTATTCTGGTATCAGCTAGAAGGGGTTGCGAGAGGTTTCATGAACTTGAACAGTAATATTATCATGCAGCCCAGTGTGGTTCTGAACAGCCTAGTTTCCCATCTTTGAGGATCCTGATGTGTGGTCCAGGAACCCCTTGAGGTCCTTAacgcttgtgttgtcttcctgacgaccatgcaacttttagtttttctaggtccaaataaataaattcaatgTTTTGGTCATCTTTCAA

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816252.1 True 2325 mRNA 0.46 2 13408733 13411986
XM_039816259.1 False 2157 mRNA 0.44 2 13408733 13415673

Neighbor

gene id symbol gene type direction distance location
LOC120564537 NA coding downstream 4588 13393147 ~ 13404145 (-)
LOC120564530 NA coding downstream 16698 13384811 ~ 13392035 (-)
LOC120567325 LOC104941710 coding downstream 51031 13322665 ~ 13357702 (-)
LOC120567925 NA coding downstream 243207 13140281 ~ 13165526 (-)
LOC120564587 NA coding downstream 293591 13098899 ~ 13115142 (-)
LOC120558389 LOC104933357,LOC103367030,LOC103383226,LOC100692841 coding upstream 12767 13428440 ~ 13474559 (-)
soul5l LOC104926857,LOC103375185,LOC100694454 coding upstream 183057 13598730 ~ 13607821 (-)
LOC120558365 gpr108,LOC107090075 coding upstream 194626 13610299 ~ 13623167 (-)
LOC120558503 NA coding upstream 214921 13630594 ~ 13632316 (-)
LOC120558275 NA coding upstream 235077 13650750 ~ 13658617 (-)
G4066 NA non-coding downstream 136559 13195046 ~ 13272174 (-)
G4032 NA non-coding downstream 251516 13089192 ~ 13157217 (-)
LOC120567935 NA non-coding downstream 255887 13151720 ~ 13152846 (-)
LOC120567932 NA non-coding downstream 257110 13138058 ~ 13151623 (-)
G3995 NA non-coding downstream 343672 13058846 ~ 13065061 (-)
G4115 LOC101079010,LOC105939483,LOC106946826,LOC103153258,LOC106910155 non-coding upstream 72247 13487920 ~ 13491997 (-)
LOC120558524 NA non-coding upstream 104328 13520001 ~ 13536248 (-)
LOC120558530 NA non-coding upstream 349520 13765193 ~ 13767856 (-)
G4354 NA non-coding upstream 629687 14045360 ~ 14045719 (-)
G4359 NA non-coding upstream 639770 14055443 ~ 14056457 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 368453 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 380340 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 542694 12865968 ~ 12866039 (-)
trnac-gca_2 NA other downstream 546132 12862530 ~ 12862601 (-)
trnac-gca_1 NA other downstream 546968 12861694 ~ 12861765 (-)
G4168 NA other upstream 116080 13531753 ~ 13567266 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other upstream 603229 14018902 ~ 14042510 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 1296471 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 1485473 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 2010871 15426544 ~ 15685639 (-)

Expression


Co-expression Network