LOC120568678


Basic Information

Item Value
gene id LOC120568678
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6269260 ~ 6286424 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816337.1
gtttaaaaaaataataataatatcccGATGCATCTCTGTATGCGCAAAATCCGAGCATCTTTGTTGCTCTTGAACGCAGCCCCGAAAGGAACTCTGGGAATAACAAGATGGCGGGACGTTCGAAAGTTCTTCCGACAGACAGGCCGACTTTACTACaaaataaactgtaaataaaaaggCGTAAAAGCAAAAACTGGCAACCGGTACACCGGCAACAGACCGCCCGGTAACGGCCGGTAACCATGAACCGGGGCCGCGGGAATATTAATCCTCTGTCCGGTCTGATTGTGACATTGTCTCCGCAGCAGCAACAGGCGGCGGCCCCGTCAAAGCCTAACCGACTGAGGAGAAGTTTCAAGCGGACTCAGCAGACGCAAATATCGGCGGAGCTCGGCTCTCCGAGGAGCCAAGAGCCCGAGTTTAAGACCCCGACGAGGATCCAGAGACCCCGAGCCGTCGGGGGATTCAGTGCCGAATCTCCGCAGAACGACTCTGACTTTCAGCAGGACATCATCTGGGACGCCACCTCTCCGTCACCCAACAGACTCGGTAAAAGAGGCAAGAAGCCGCCGGTCGGAGTCGCGAACATCTCCGAGATCGTTAACAGGATCGCTCCAAAGCACGGCAGGCCCACGGTTGCCGAGCCGACGCTGCAGCAGTGGATCGGAGACAGCGCCGCCATTCCCTGCACGCCGGACGTTCAGGTCCCCAAACCCAAGAAGAAGTCCCCCAGGCCGAACGGCGTGGACGACCTGCTGAAGCTCGCCAAACAGTTTGACCTCAACATGTTCCACCAGGACGAGGAAGCAGCGGAGCAGCAGCACCAGCACAGCCTGGAGCTCCTGTCGGAGGACATCTTGGATTTCGAGAACGACTTTTCTTCGCCTTCGCCTCCCGGTGACCGCCCGCCTGCCGCCAAGGCGCCACCGCCACCGGATCACCACATGGAGGACGACTTGGACTTCCTGTTCGACGGGCCGACCCAACTCGTGAGCGGGAATCTGAGTCAGGTGGCTTCGACCGCTCGGCCGTCTCAGCCGCAATGGAAAGCTGCGTTTCCCGAAGAGGCTTCTGGGAAACCGGCGCCGTCGGCTTCCTCGCAGCCTCCTGGCGTTGCCGCGGCGCGCGCACGCCAGGGCGCTTCGGCGCCCGACGAGTTCGAGGACGACTGGGCGGATGACGACTTGCTGCTGGACGACTCTCTGGTGTTGGAGGTGACCCAGAACCCGCAGAACTTCGTCGCCCCCAAGCACTGTTCGACCCAGAAGACGCCAAGTCCACTGGCTGAAGccgtccaatcagctgttccCAAAGTCGCCCAATCGGCTGTTCCCAAagtcgtccaatcagctgtttatCAAGTCGCCCAATCAGGAGTGACTAATAATACGTATCAAAGGGAAAGTCCCGTTCCTAAAGCCGTTCAATCAGCTGTTCCTAaattcatccaatcagctgttcctcaagtcgtccaatcagctgttccTCAAGTCGTCCAATCAGCGGTTTATCAAGTCGCCCAATCAGGAGTGACTAATAATACGTATCAAAGGGAAAGACCCATTTCTaaattcgtccaatcagctgttcctcaagtcgtccaatcagctgttcctcaagtcgtccaatcagctgttcctcaagtcgtccaatcagctgttccTAGCGTGGGAAAGGACAACGTGCGGCAGAGAACGACTTTCAAACTGGAGTCTAATCCGAGTTTCTCCGTCGCGAGAACCCAGGCGGCCGCGTGGTCGAACTCGAAGGCGGATCCCGGTTCCAAAAAATCCGAAAATGGCGCCCGGCTCTCGTCGGAGCCGCAGAAAGCGCCGTTTCCCCGAAGGACTTCTGTTCCCCGAAACGGCGCGGCAGCTTTGTCGTCGAACTCATCGGCCGCGAACGCTGCTCGGGGCTTCCCGACGACCGCGGCGGTGGTTTCGTCTCGCGGCGGCGCCGAGGAAGCGCCGGCCGTCTCCGACCTTCCGGACGTGGACCTGTCGGCGTTCTTCGCGGCCGACCCGGCGTGGGACGACCCGGCCGACGACCACCTGCTGTGCGAGATGTGCGACGACCTCGAGAACCAGACGCAGAGCGCCGAGAGCGTTCCCGCCACACGGGCTCCCGCCGCGGGCCAGAGAGCGGCGCTGCAGCCGTCCAACAGGAAGCTACCGCCAGCCAATCGGCAAGCTTCCCCCCGTCAAAAACAGACTCTAACCCAAACAGCACGTCTCCACGGTGACTCGGGCCGGTcggcgccgccgccgccgcGCGGAAACGACCGCAAAGACCAGTTCACCTTCAAGAAGCCGAGCAGCGCGGTGTCCACGGCAACCAGCGAAGTCGTGGGGAAGTGTTCGGCGGCAGAGATCGAGCTGAAGAAGCAGCAGGCCATGGAGAGAAGACGCCAGCGTCTGCTCGCCGCCGGGAACCTCCGAGCGCCAACGTGACGGAGAAAAACCTGCTGCCGACTTCCTCCCGATGTTTTCAGCGAGTCTCGTACTCGTGTATGTTCTTGTCCAGTTAAActgtaataatattattttatattatgtttCTAATCCATCAGATCTCTCTgagaagtgctcatattatgcttgttttcaggttcataattgatTGTATTTTAGAGGTTATATcggaataggtttacatggtttaattttcaaaataaaacatttttgttgtactgcacattgctgcagctcctcttttca

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0044427 obsolete chromosomal part cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816337.1 True 2717 mRNA 0.57 6 6269260 6286424

Neighbor

gene id symbol gene type direction distance location
LOC120563932 NA coding downstream 52779 6213667 ~ 6216481 (-)
LOC120563881 NA coding downstream 55660 6208778 ~ 6213600 (-)
LOC120563858 NA coding downstream 71025 6183835 ~ 6198235 (-)
aplf NA coding downstream 149726 6065192 ~ 6119534 (-)
LOC120563841 NA coding downstream 220871 6042226 ~ 6048389 (-)
LOC120573968 LOC103383287,LOC103375385,LOC108228344,LOC101483597,LOC101070538,LOC106535156,LOC105919311 coding upstream 180715 6467139 ~ 6475893 (-)
LOC120574130 NA coding upstream 190541 6476965 ~ 6482370 (-)
LOC120574175 NA coding upstream 201596 6488020 ~ 6491799 (-)
LOC120574032 NA coding upstream 208146 6494570 ~ 6507444 (-)
LOC120569774 NA coding upstream 478116 6764540 ~ 6764654 (-)
G2152 NA non-coding downstream 31027 6136327 ~ 6238233 (-)
G2092 NA non-coding downstream 47395 6217152 ~ 6221865 (-)
G2160 NA non-coding downstream 105648 6163254 ~ 6163612 (-)
G2158 NA non-coding downstream 109529 6159154 ~ 6159731 (-)
G2147 NA non-coding downstream 110545 6116497 ~ 6158715 (-)
G2184 NA non-coding upstream 37285 6323709 ~ 6381968 (-)
G2194 NA non-coding upstream 70663 6357087 ~ 6367016 (-)
G2196 NA non-coding upstream 85893 6372317 ~ 6372937 (-)
G2185 NA non-coding upstream 106629 6393053 ~ 6393631 (-)
G2222 NA non-coding upstream 242242 6528666 ~ 6548809 (-)
G2177 NA other downstream 2022 6266606 ~ 6267238 (-)
LOC120563747 LOC104946033 other downstream 62370 6200947 ~ 6206890 (-)
G2146 NA other downstream 157668 6111139 ~ 6111592 (-)
LOC120563692 NA other downstream 532274 5731439 ~ 5736986 (-)
LOC120563672 esf1,LOC108229506 other downstream 769267 5476545 ~ 5499993 (-)
G2219 NA other upstream 235082 6521506 ~ 6534443 (-)
spred2a spred2 other upstream 254218 6540642 ~ 6581598 (-)
vps54 vps54 other upstream 522328 6808752 ~ 6876237 (-)
LOC120565104 peli1,LOC103372217,LOC100709940,LOC102294912,LOC101486541,LOC108247092,LOC107382286 other upstream 602864 6889288 ~ 6938987 (-)
LOC120571633 otx1,LOC102233826 other upstream 712747 6999171 ~ 7017659 (-)

Expression


Co-expression Network