LOC120569182 (ttc39b,LOC103361331,LOC103383857)


Basic Information

Item Value
gene id LOC120569182
gene name ttc39b,LOC103361331,LOC103383857
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 30440382 ~ 30447099 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817036.1
GAGATCGTTTTCCCTACATAGGAAAAGAAAGACGTCAAGTCTCTTTGCAACGTTAAGCGTAGTCTTTTTTAATCTGACTCAAATTCCGACATCAAATGGAGACTAAAAACGACAATTCACTACAACAGGTGGACCTAAACCAAATCACTGAGGATTCAATATCCCCTGAAATGGATTTAGAGGCTGCACTGAAGGATTGCTCGACCGCCCTCGGTTTGTTTCTAAACAACCGGTTTTCTGATGCTTTGGCTATCTTAAAACCCTGGAAGAGTCAGAGCATGTACCACGCAATGGGCTACAGCAGCATCTTGGTGATGCAGGCAGGCATGACCTTTGACCCGAAGGACATGGATGCCGCCATGGCATCACTGAGAGAATCACTGCAGACATGCCAAAGATTTCGGAAGAAAACTGGAATAGTGGAGACTTTAACAAGCCTATGGTTTAGACAACCAGCTGACAACCTGACAGAAGAGGAAATGCATGCAGAGCTATGCTATGCTGAAGTTCTGCTGCAGAAAGCAATGCTGACATTCCTGGATGAGAGTATAATCGGCTTCATCAAGGGAGGGATGAGTATCCGAAACAGTTATCAGATTTACAAGGATTGCCAGGCATTGGCCAGTGTCACAAATGATATGGAAAAACAGAAgagcacacacattcattttagGGGCGGTGTCAACATGGGCATTGGATCATTTAATCTGATGCTTTCTCTGCTCCCATCCAAAGTCCTCAGACTGATGGAGTTTTTGGGCTTCTCAGGAGACAggGAAATGGGTCTGTCAGAGTTGAGAAAAGGAGCAGCCAGCAACAGCCTGCGCTCCATCCTCAGCACCCTGACTCTGCTGATGTTTCATCTCTACATTACAGTGATTCTGGGTACTGGTGAAGGTAACCTCACTGAGGCTGAAGCTCTGCTGGAGCCCTACATTGAAAAGTTCCCGAATGGAGCGCTCATTCTTTTCTACATTGCAAGAATTGCTTTGCTCAAAGGAAACTTCTCATTTGCCCAGGAGAAGTTCCTGGCATGTATCGCCACACAGCAGGAGTGGCGTCAGATTCACCACCTGTGTTACTGGGAGCTGATGTGGGCCTACTCCTTTGAACAAAATTGGAGGGAGGCGTATCGATACGCTGAACTGCTCTGCAAAGAGAGCAAGTGGTCGCAGGCCACCTATACATTCCAGAAAGCCGCCATCTTGAGCATGCTACCAGAGGAAGAAGTGACCAAACTGGGAGAAAATATGGTGGAGTTATTCAGGCAGGTGGATGGTCTCAGACTGAGGATTGCTGGGAAGTCTATTCCAACAGAGAAGTTTGCCGCAAACAAGGCGAAGCGATACTCTTCTTCTAACCCTGTGAAACTAGTCGTGCCTGCTTTGGAGATGATGTACGTATGGAATGGTTTCACAGTCGTTGGCAAAAGACCCGAATTGACTACAAACATCTTGACCACCTTGGAGGAAGCAGAAGAGCTGCTCAAAGATGATCCAAACCCATCAGAGTATCAGCTGGATGACCAGTGTGTAGTTCAGCTGCTAAAGGGCCTGTGTTTAAGACAGCTGGGGCATCTGCTCCAGGCTGAGCTCTGCTTCAATCATGTCATTTCCAGTGAAAAAGCTATCAAGCATGACAACTACCTGGTGCCATTCACCATGTATGAGCTGGGCCTGTTGCACAAGCAGAAAGGTGACATCAACACAGCCATCACAGTGATTGAAAATGTCAAGATGAACTACAAAGACTACCAAATGGAGTCAAGGCTACACTTCCGCATCCACGCAGCACTCAACACCATGGGCTCTTTTTCAGCCAAACTTCCCCCTTCACGTACGCCAGCTTAAGAGACCGTTTGGAAGGATGCTCACAAAGTACAAACAACCTGAAATAAAGGTTCTCAACCCTG

Function

symbol description
ttc39b Predicted to be involved in several processes, including cholesterol homeostasis; negative regulation of cholesterol storage; and regulation of cholesterol efflux.

NR:

description
PREDICTED: tetratricopeptide repeat protein 39B-like

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817036.1 True 1912 mRNA 0.47 18 30440382 30447099

Neighbor

gene id symbol gene type direction distance location
dnajb14 dnajb14 coding downstream 1327 30424606 ~ 30439055 (-)
pla2g12a pla2g12a coding downstream 16360 30418495 ~ 30424022 (-)
LOC120560609 casp6 coding downstream 32690 30401440 ~ 30407692 (-)
lef1 lef1 coding downstream 119419 30278527 ~ 30320963 (-)
papss1 papss1 coding downstream 188754 30206501 ~ 30251628 (-)
psip1a psip1 coding upstream 7251 30454350 ~ 30464962 (-)
spag5 NA coding upstream 485650 30932749 ~ 30950945 (-)
trmo NA coding upstream 508523 30955622 ~ 30960798 (-)
hemgn NA coding upstream 514637 30961736 ~ 30964319 (-)
coro2aa LOC103364489,LOC104937679 coding upstream 528456 30975555 ~ 31012392 (-)
G8843 NA non-coding downstream 85730 30354438 ~ 30354652 (-)
G8834 hadh,LOC103384097 non-coding downstream 167032 30271464 ~ 30273350 (-)
G8790 NA non-coding downstream 432399 30006394 ~ 30007983 (-)
G8707 NA non-coding downstream 819898 29620019 ~ 29620484 (-)
G8704 NA non-coding downstream 824982 29615125 ~ 29615400 (-)
G8880 NA non-coding upstream 3232 30450331 ~ 30450686 (-)
G8890 NA non-coding upstream 252038 30699137 ~ 30699343 (-)
G8952 NA non-coding upstream 362272 30809371 ~ 30899158 (-)
G9081 NA non-coding upstream 666517 31113616 ~ 31120342 (-)
G9104 NA non-coding upstream 807987 31255086 ~ 31255294 (-)
G8701 NA other downstream 846759 29589308 ~ 29593623 (-)
rnf24 rnf24,LOC102778784 other downstream 1100535 29306021 ~ 29339847 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 3145471 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 3861567 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 3904646 26533833 ~ 26535736 (-)
bnc2 bnc2 other upstream 128773 30575872 ~ 30744878 (-)
G8975 NA other upstream 524289 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 1487538 31934637 ~ 32006542 (-)
LOC120567365 NA other upstream 1774858 32221957 ~ 32226423 (-)
lrba NA other upstream 2137625 32584724 ~ 32781154 (-)

Expression


Co-expression Network