LOC120569316 (LOC104945333,LOC102299380,LOC102207980,LOC101475478)


Basic Information

Item Value
gene id LOC120569316
gene name LOC104945333,LOC102299380,LOC102207980,LOC101475478
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17657147 ~ 17676202 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817168.1
ACCAAAATCACATCCTTCTTTTCCTCCAGTGCTCGCTCCCTTCTTTCTCCTTGTCACTCCAGGCTGAGATCAACAGGATGCTGTGCCTCGGCTCCCTgtccaccctcctcctcctgcttctCCTCTACCCCCCTCCGGTGTCTGCCCAGGAGGTGCTTGTACGTCTGGCAGGCGTAGGCCGTCGCAATGCCAACGAGGGACGTGTAGAGGTGTTCTACAATGGCGCATGGGGCACAGTGTGTGACGACGAGGTCGATCTTAATATGGCCAATGTGGTGTGCCGTCAGCTGGGCTTCCAACGCGGCTTGACCTGGGCACACAGTGCCAAGTTTGGCCAGGGTCAAGGTTTGATCTGGTTGGACAATGTGCGCTGTACGGGCACAGAGCTCTCCATTGCTAACTGTCGCTCCAATGGTTGGGGAATCAATGACTGCACCCACGCTGAGGACCTGGGGGTCATTTGCAGCCCAGAAAGAATACCTGGCTCCCCCGCTGTCGCCGTGGAGGAGGCTCCTTCATCCTCCAGGCACCAGCCAAACCAGCCAGGACAGAGAAACCCACCACCGCTGCCACAGTCTGTGCCACCCCCAGCCCACATCTCCTCATCTTCTGCGAGAGGCCATGAGATCGCCCTCCATCGCAACCCAACTTCTTCCCGTCGCAGCATCATCTCCCCGCAAGAAAATGGCCACGAGATCCAGATCTTGCGACGGAATCGAGGTGGTTCCAGAGCAAGCCCGCAGGTCAGCCCGGCTCTGCCACAAGGGCACCAGCTACTTTCACGTCTGGCAAACGGCGCAGCCTACAGGCAGAGACAGGACACAGCCGTGAGACAAGAGGCAGAGGGACGGACGAACAGGCAGTCCCAACCCCAGTCTGAGCGGAGGAGTGACAGGCATCAGCAGCTCAGTGGGAACCATGTCGAACCAGATTTGGAACTGGAGACTGATGTGCACTACACAcagGGTTCTGATAGGGTTCACTTAGAGGAGGCTCGACTACGGCCTGTGCTGTCCAGCAACCATGGCGGTCTGGTGACGGAGGGAGTGCTGGAAGTGAAGCATGCTGGGAGGTGGCGTCATGTGTGTAACCAGGGCTGGGACCTCAGCAGCAGCCGTGTCGTCTGTGGCATGTTAGGATTCCCGGCTGCAGAAGTGTTTGACCAAAACGCCTACAGgAAACTGTGGGACTCCAAGTTAGCTGATCCCTCCTCCAGGCTGAGGACGCAGATCAGTAAGAAGGCCTACTGGGTGGAGAAGGTGCAGTGTCACGGCAGGGAGGTCTCTCTTTCACAGTGCCAGGCCCAGCTGTCCCTCCCCAGGAGTGATGTCCCGTGCCGCGATGGCATGCACGCTGTGGTCCGCTGTGTCCCTGGGTCCCAGTTCACACGTTATGGCAGAGCACCTGCACCGCCCGCCGTGACGCCCGTTGTGCGCCTCAAGGCGGGGCCCCGGCTCGGGGAGGGCCGTGTTGAGGTGCTGAGGGAGGGGAAGTGGGGTACCGTGTGTGACCACCTGTGGGACATGGCTGCAGCCAGCGTGGTCTGCAGAGAGCTGGGCTTTGGGACGGCCAAAGAGGCGCTCACCAAAGCTCACCTGGGACAGGGTACCGGCCCCATCCACATGAACAGCGTGCAGTGTACAGGCAGGGAGAAGTCGATTACAGAGTGTACCTACAGACAGGTGCCGCTTTACAGCTGCAAACACAACCAGGATGTAGCGGTCCGCTGCAACGTTCCCAACACTGGCATGCAGGCCACGGTGCGTCTGGCAGGAGGCAGAGAACCATCAGAGGGCCGTGTGGAGGTGCTGATGGAGGCCGGAGGGGTGAGGCGTTGGGGCTCCATCTGCAGTGAGAACTGGGGCATCAACGAGGCCATGGTGGTCTGTCGACAGCTGGGTTTGGGCTTTGCTTCAAGTGCTCATCAGGAGACCTGGTACTGGCCTGGTTCTTCAGATGCTGGTGAGGTGGTTTTGAGTGGAACGCACTGTATCGGCACTGAGATGTCTGTCCAGCAGTGTCGCAGAAACACAAATGtgtactgtcccagaggaggagatggcagAGCTGCAGGAGTCACATGTGTAGAAACCGCTCCTGACCTTGTCCTGGATGCTCAGCTCGTCCAGGAGACAGCCTACCTGGAGGACCGACCCCTCCACCTGCTGTCCTGCGCTAATGAGGAGAACTGCCTGTCTTCCTCTGCCGCCAGGATGAACTGGCCCTACGGACACCGCCGCCTGCTGCGCTTCTCCTCCCGTATCATGAACATGGGCCGCGCCGACTTCCGACCCCGAGCCACCAGAGAAAGTTGGACATGGCACCAGTGTCATAGGCACTACCACAGCATTGAGGTGTTCACCCATTATGACCTGCTGACGCTCAATGGGACCAAGGTGGCGGAGGGTCACAAGGCCAGCTTCTGTCTGGAGGACACCTACTGCCCTGAAGGTATCCATAAGCGGTATGCTTGCTATAACATGGGACAGCAGGGTATTTCAGTTGGCTGCTGGGACACCTACCGCCACGATATTGACTGCCAGTGGGTCGACATCACAGACATACGGCCTGGCGAATACATCTTCCAGGTGGAGGTCAACCCTACCTTAGACATGGCCGAATCTGATTTCCAAAACAACGTGATGCGCTGTCGGTGCAAGTATGATGGAGAACGAGTTTACATGTTTGGATGCCATGCAGGTGATGCTTACAGCGCCGAGGTGGAGGACTTGTTTGACCACCAACGTCAGATCTCCAACAACTTCCTGTGAATTAAGGAACACGCAGATTTAAGGACAGAACAACTGTACAACTTTTCACCACACCTCAACATGTCAGGGGAAAGAGGTTGAATGACAATGACATGCCAGTAGATAGAAAGAAGAGGGTCAGAGGGAGGAGGGTGGGAAACTGGGATGGTATGGGAGGGACTTCATGCAAAATGACTAATTAGGATCCCGTAACCTGACAGAAAAAGACTAAAGTAAACCATCACAAGCATCATGTCACCATGATAAAACATAGAGTAGCTCACAATTTTAAAAGTGTGTCCTGACTTTTGTAACAAATGTAATTCCCTTGATCAAAACTTAACCACAGTTAAGAAAGTAATGACATGAAGGCACAATGAGACCAACACATCCTTTAATCTTACAGTACACCACCAGGCTGTCGTTCATATAAAATCAACCCAGGTAACAGACTGTCTACAAAACTCTGTACATGCTTCCTGTGCTTTCACTGTTGACATTACTAATGCAGTATTTACTGTTACAACTGTGTGGTTTTTGGTTTGAAtgagaattgttttttttatttcatggtgCTATTTTGCCTTTTGAAtaaatattgtaatgtattgCAAATGTATTGTCATGTACAGTTTTATATTACCTCTCTGGAATATTGTTCTTTAGATCTCTAATTTATGCAGAAATTTAATGTACTTTTGAGTTGAACCTTGTCCCTGTGTGGCTGTGTtatgtattgtttattttatgatGACAAATATTTtcacttgtttgtttttcacctGTTCAGCATCGGAAACATCAGATGAGATGTGGTTGTACCACGGTATTGCGCCTTTAACAGTACTTGGTAATGGTAGTTAAAGAATAAACGTCAAATTGACAAACTATGGTTA

Function

NR:

description
PREDICTED: lysyl oxidase homolog 4-like

GO: NA

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817168.1 True 3646 mRNA 0.53 15 17657147 17676202

Neighbor

gene id symbol gene type direction distance location
crtac1a LOC104945331,LOC103368018 coding downstream 9325 17641306 ~ 17647822 (-)
avpi1 NA coding downstream 40066 17614153 ~ 17617081 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding downstream 50845 17602906 ~ 17606302 (-)
exosc1 exosc1,LOC107700859 coding downstream 58299 17594016 ~ 17598848 (-)
pkd1a pkd1 coding downstream 132301 17458774 ~ 17524846 (-)
LOC120562183 tekt4 coding upstream 1468 17677670 ~ 17681784 (-)
LOC120560159 NA coding upstream 17355 17693557 ~ 17754482 (-)
LOC120556506 NA coding upstream 81467 17757669 ~ 17763809 (-)
LOC120560200 NA coding upstream 90721 17766923 ~ 17768175 (-)
LOC120560193 NA coding upstream 97082 17773284 ~ 17779277 (-)
G5522 NA non-coding downstream 11482 17617187 ~ 17645665 (-)
G5506 NA non-coding downstream 43939 17557841 ~ 17613208 (-)
G5449 NA non-coding downstream 209113 17399905 ~ 17448034 (-)
G5435 LOC104952676 non-coding downstream 306172 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 323537 17331757 ~ 17333610 (-)
LOC120560186 NA non-coding upstream 23058 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 27014 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 61870 17738072 ~ 17739847 (-)
G5616 NA non-coding upstream 105578 17781780 ~ 17782013 (-)
G5638 NA non-coding upstream 176462 17852664 ~ 17852981 (-)
LOC120569099 NA other downstream 236049 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1309225 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1971508 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2752918 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2938045 14712144 ~ 14719102 (-)
LOC120560175 NA other upstream 34437 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 141305 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 159702 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 203666 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1208766 18884968 ~ 18890220 (-)

Expression


Co-expression Network