ttc26 (ttc26,LOC102798810)


Basic Information

Item Value
gene id ttc26
gene name ttc26,LOC102798810
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22022244 ~ 22033208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817193.1
GCAACCATTAAACTATCAGCatcagctagctaacgttaaccagGAGGATTGTACATTATTCTCCAGTCTAAAAACGTGTTAACTTTAACTGTAATGTTATCAGTGCCCTATTAGTCGTTAGGGAATTCAGTTTACGTGGTAGCGTTATCTGGCTGGTTTCAATGAAAGATGAAAGTGGATTGCTAAAAACGTTAGGAATCGTGCGTAACAGGtaaaagctaacgttaacagttGGTGTTTTCGTTGATAGAAACACCCAGCGTTACCTAGGTTAGCTAGAGATAAACAAGTCTTAGCTAGCGCTAACGTTAGGTGCATCTAGACTCGTCGACATGATCCTTTCTCGCGTGAAGCCAGCCGTGGGAGGAGAGACACCGTTGAGCATCagtgagaaaaagaggaaaaacaagacaaaagttCCTAACTTGGAGGAATACCTGCAACAGAGAGACTACCTTGGGGCTTTGACACTGTTAGAGTTTCAGAGAAGTATCGGCGAGAAAGAGGAGCATACGGACCAATGGATTGGCTACTGCGCCTTTCACTTGGGTGATTACAAGAGAGCTATGGAGGAGTACAAGTCTCTGACCATGAAGCCTGAATGTCCTGCTCAGGTGTGGGTCTTTCTGGCCTGTGCAATGTTTTTTCTGGGGCTCTATAAAGAGGCTGAGGAGGCCGCATCTAAGGcGCCAATGTCCCCCCTCCAAAATCGATTACTCTTCCACTTGGCTCACAAGttcaatgaTGAGAAGAAGCTGATGGGTTTCCACCAGAACCTAGAGGATGTGACAGAGGACCAGCTGAGCCTGGCATCCATCCACTACATGCGCTCCCACTACCAGGAGGCTATAGACATCTATAAACGCCTTCTACTGCAGAACAGAGATTACCTCGCCCTGAAAGTTTACGTGGCTCTGTGTTACTACAAGCTGGACTACTATGATGTGTCCCAGGAGGTGTTGGCTGTGTACCTGCAGAGCATGCCAGACTCCACTATTGCCCTCAACCTCAAGGCCTGCAACCACTTCAGACTCTACAATGGCAAGGCAGCTGAGGCTGAGTTGAAGAACCTAATCGACATCTCCTCCTGCTCCTTTGAGTTTGCTAAGGAGCTTATCCGACACAACCTGGTGGTGTTTCGCGGTGGGGAGGGGGCGTTGCAGGTGCTGCCTCCGCTGATCGATGTGATCCCAGAGGCCAGACTCAACCTAGTCATCTACTATCTCAGACAAGATGATGTCCAGGAAGCGTACAATCTCATCCAAGATTTGGTGCCCACGACACCTCAGGAGTATATTTTGAAAGGAGTGGTAAATGCGGCGTTGGGACAAGAAATTGGATCAAGGGATCATCTGAAAATTGCTCAGCAGTTCTTTCAGTTAGTTGGAGGCTCGGCCAGCGAGTGTGACACTATTCCTGGCAGGCAGTGCATGGCCTCCTGCTTCTTCCTCTTGAGACTGTTTGAAGATGTTCTCATATATCTAAACTCAGTCAAGGGTTACTTCTATAATGATGATACGTTCAACTTCAACTATGCTCAAGCTAAAGCAGCCCTTGGCAACTACAAAGAAGCAGAAGAGATTTTTCTGCTGATTCAGAGTGAAAAGATCAAGAATGACTATGTCTACCTCAGCTGGCTGGCACGATGCTACATAATGAACCAGAGGGGTCGACTTGCCTGGGAGCTCTATCTGAAGATGGGCACTTCCTCCGATTCCTTCAGTCTGCTGCAGCTCATTGCCAACGACTGCTACAAGATGGGCCAGTTCTACTATGCAGCTAAAGCGTTTGATGCACTGGAGAAACTGGACCCAGGATCCAACTACTGGGAGGGCAAGAGAGGAGCATGTGTCGGCATCTTCCAGCTCATACTGGCAAATAAGGAGTCCAAGGAGACACTTAAAGAGGTGTTGTCTCTGCTGCGAAATTCAGGAAACCCCCAGGTTGAATACATCATCCGAGTTCTGAGGAAGTGGGCCAAAGACAACAGAGTCCTCCTCTCATGACAACTTTGGGCACTGAACTTCAGCTCACTACATCAAGAGTAGCTACATTATGCAGACATCATCAGTCATAGTGCATTTGGTCATTTCACTTGATTAAATCGTATTTATGATATCTACACCCCAAGAAGAAATATGGAACTATTATTTCTGCCACACTATTGTTGAAATATGTAAGTTTTGAATTGCAATTCTCTATATACTcatatatttgtattaaaatgtgactgtattttttaa

Function

symbol description
ttc26 Predicted to enable intraciliary transport particle B binding activity. Involved in cilium assembly; intraciliary transport; and photoreceptor cell morphogenesis. Acts upstream of or within photoreceptor cell outer segment organization and pronephric duct morphogenesis. Predicted to be located in cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in ciliary basal body and ciliary base. Is expressed in Kupffer's vesicle; forerunner cell group; neural plate; neural tube; and pronephric duct. Orthologous to human TTC26 (tetratricopeptide repeat domain 26).

NR:

description
PREDICTED: tetratricopeptide repeat protein 26

GO: NA

KEGG:

id description
K19685 TTC26, IFT56, DYF13; intraflagellar transport protein 56

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817193.1 True 2243 mRNA 0.46 18 22022244 22033208

Neighbor

gene id symbol gene type direction distance location
LOC120558174 ubn2,LOC103364441 coding downstream 1809 22000268 ~ 22020435 (-)
cygb2 cygb,LOC104922950,LOC103373403 coding downstream 144986 21856670 ~ 21877258 (-)
LOC120557332 NA coding downstream 203801 21812708 ~ 21818443 (-)
LOC120567942 sphk1 coding downstream 230128 21755292 ~ 21792116 (-)
aanat1 aanat,LOC102776855 coding downstream 315393 21703381 ~ 21706851 (-)
slc25a38b LOC103364442,LOC107382263,LOC108242715,LOC106515296,LOC105939773,LOC103153186,LOC101165446,LOC106917329 coding upstream 8517 22041725 ~ 22051538 (-)
LOC120565705 NA coding upstream 19802 22053010 ~ 22085472 (-)
map2k7 map2k7 coding upstream 62752 22095960 ~ 22111807 (-)
pkn1a pkn1,LOC103364445,LOC108242730,LOC107382353,LOC103383564 coding upstream 81908 22115116 ~ 22171674 (-)
si:ch211-214c7.4 LOC107102761 coding upstream 149475 22182683 ~ 22209730 (-)
G6654 NA non-coding downstream 45096 21968847 ~ 21977148 (-)
G6653 NA non-coding downstream 46003 21968004 ~ 21976241 (-)
G6618 NA non-coding downstream 174611 21835827 ~ 21847633 (-)
LOC120568701 NA non-coding downstream 210321 21811200 ~ 21811923 (-)
G6617 NA non-coding downstream 259938 21762097 ~ 21762306 (-)
LOC120568056 NA non-coding upstream 2077 22035285 ~ 22040931 (-)
LOC120569580 NA non-coding upstream 5801 22039009 ~ 22039151 (-)
G6731 NA non-coding upstream 57292 22090500 ~ 22091557 (-)
G6764 NA non-coding upstream 231176 22264384 ~ 22265992 (-)
G6762 ddx39a,LOC103150096 non-coding upstream 291342 22324550 ~ 22325383 (-)
G6592 ube2o,LOC106534564 other downstream 312432 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 453185 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 1828906 20187281 ~ 20193338 (-)
spink4 NA other downstream 1977518 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 2225722 19766497 ~ 19796522 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 295311 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 632167 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 948717 22981925 ~ 22988500 (-)
G6924 NA other upstream 1055292 23088500 ~ 23164937 (-)
G6943 NA other upstream 1180648 23213856 ~ 23242290 (-)

Expression


Co-expression Network