cct4 (cct4,LOC102790717)


Basic Information

Item Value
gene id cct4
gene name cct4,LOC102790717
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7602033 ~ 7613702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818941.1
CCGGGCAGTTTGACAGCCGGGTCTTTCTTCTCTGCGCAGCAGCCGGTGTCTCTAGAAGGTTCTGACTGGGACCGGGTGGAGATACTTTAATCTGAGTCCATCCTAAGCCGAACCGCGGTGTATCAGCTCCGGGACTCATCGGTCCCGTTCTGAAGACTTCCCTTAACGTTCTCCACCGATTATCAAGTCAAGATGCCCGAAATGAAAGCAGCTCCGAGAGCCTCAAACACGGGGAGAAACAAAGGAGGGGCGTATGTGGACCGCGACAAGCCGGCCCAGATTCGGTTCAGTAACATCTCCGCTGCTAAAGCTGTCGCGGATGCCATCAGAACAAGCCTGGGGCCGAAAGGCATGGACAAAATGATCCAGGATGAGAAAGGTGACGTGACCATTACCAACGACGGCGCCACCATTCTGAAACAGATGCAGGTGCTCCACCCTGCCGCCAAAATGctggtGGAACTAGCCAAAGCCCAGGACATTGAGGCTGGCGACGGCACCACCTCCGTGGTGGTGATTGCCGGAGCGCTGCTGGACGCCTGCTCCAAACTGCTGCAGAAAGGTATCCACCCCACCATCATCTCCGAGTCGTTCCAGAAGGCCGTGGAGAAAGGCGTGGAGGTGCTGACGGCCATGAGCCGGCCGGTGCAGCTGAGCGACCGCGAGACGCTGCTCAACAGCGCCACCACGTCGCTGTGCTCCAAGGTGGTGTCGCAGTACTCCAGCCTGCTGGCGCCCATGAGCGTGGACGCCGTCATGCGAGTCATCGACCCGGCCACCGCCACCGGCGTCGACCTGCAGGACATCAAAATCATCAAGAAGCTCGGAGGGACCATTGATGACTGTGAGCTGGTGGACGGCCTGGTGCTGACCCAGAGGATCTCCAACACCGGAGTGTCCCGTGTGGAGAAGGCCAAGATCGGCCTCATCCAGTTCTGCCTGTCCCCTCCCAAAACTGACATGGACAACCAGATCGTGGTGTCGGACTACGCCCAGATGGACCGCGTGCTGCGCGAGGAGCGCGCTTACATCCTCAACATGGTGAAACAGATCAAGAAGGCCGGCTGCAACGTGCTGCTCATCCAGAAGTCCATCCTCAGGGACGCTTTGAGCGACCTCGCCCTGCACTTCCTCAACAAAATGAAGATCATGGTGGTGAAGGAGATCGAGAGGGAGGACATTGAGTTCATCTGCAAGACTCTAGGCACCAAGCCCATCGCCCACATCGACCACTTCACTGCAGAGATACTCGGCACGGCCGAGCTGGCGGAGGAGGTCAGCCTGGACGGCTCCGGCAAGCTGGTCAAGATCACCGGCTGCACCAGCCCCGGGAAGACGGTGAGCATCGTGGTTCGCGGCTCCAACAAGCTGGTGATCGAGGAGGCAGAGCGCTCTATCCACGATGCGCTGTGTGTTATCCGCTGCCTGGTCAAGCAAAGGGCTCTGATAGCTGGTGGCGGCGCTCCAGAGATCGAGCTGGCCGTGCGTCTGGCGGAGTACTCGCGCACTCTGGCCGGCATGGAGGCCTACTGCGTGCGGGCGTACGCCGACGCCCTCGAGGTGATCCCCTCGACGCTGGCTGAGAACGCCGGCCTGAACCCCATCTCCACGGTGACGGAGCTCCGCAACAGGCACGCTCAGGGAGACAAGATGGCCGGCATCAACGTCCGCAAGggaGGAATCTCCAACATCCTGGAGGAGCTGGTGGTGCAGCCTCTACTGGTCTCCATCAGTGCTCTGACCCTTTCCACAGAGACGGTTCGCAGCATCCTCAAGATCGACGACGTGGTGAACACCCGATAAATTGAGTCTGTCCCGTGAGTTCTGTCCACTAAGCCTGCTCGTACTGCGAGGGATCAGAGGACTCTGTCAACGTCGGTCTGTTCAGATTTCCGCTGTAGTTGTTACGTTgcataatttaataaaaaggcttctttttttttgttgacactCCA

Function

symbol description
cct4 Predicted to enable unfolded protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be part of chaperonin-containing T-complex. Is expressed in several structures, including head; immature eye; midbrain; muscle; and pectoral fin bud. Orthologous to human CCT4 (chaperonin containing TCP1 subunit 4).

NR:

description
PREDICTED: T-complex protein 1 subunit delta-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09496 CCT4; T-complex protein 1 subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818941.1 True 1955 mRNA 0.59 13 7602033 7613702

Neighbor

gene id symbol gene type direction distance location
fam161a NA coding downstream 494 7585395 ~ 7601539 (-)
xpo1a xpo1,LOC103359566 coding downstream 20009 7554032 ~ 7582024 (-)
LOC120569585 NA coding downstream 29576 7572321 ~ 7572457 (-)
LOC120569612 NA coding downstream 44135 7557767 ~ 7557898 (-)
usp34 NA coding downstream 50418 7441070 ~ 7551615 (-)
LOC120561073 NA coding upstream 277005 7890707 ~ 7895739 (-)
ltv1 ltv1,LOC107100359 coding upstream 301496 7915198 ~ 7931404 (-)
taf5l taf5l coding upstream 355648 7969350 ~ 7979457 (-)
cdc6 cdc6,LOC102777898,LOC104942167 coding upstream 465520 8079222 ~ 8095263 (-)
LOC120558849 NA coding upstream 551258 8164960 ~ 8293126 (-)
LOC120568185 NA non-coding downstream 160966 7433916 ~ 7441067 (-)
G2451 NA non-coding downstream 163761 7436474 ~ 7438272 (-)
LOC120568064 NA non-coding downstream 325490 7271819 ~ 7276543 (-)
LOC120564702 NA non-coding downstream 333644 7263691 ~ 7268389 (-)
G2392 NA non-coding downstream 434206 7166432 ~ 7167827 (-)
G2743 NA non-coding upstream 18672 7632374 ~ 7633344 (-)
G2732 NA non-coding upstream 28420 7642122 ~ 7662768 (-)
G2750 NA non-coding upstream 108235 7721937 ~ 7722318 (-)
G2759 NA non-coding upstream 200091 7813793 ~ 7860439 (-)
G2766 NA non-coding upstream 349564 7963266 ~ 7965265 (-)
LOC120569296 NA other downstream 229475 7331956 ~ 7372558 (-)
commd1 commd1,LOC102781613,LOC103150757 other downstream 361883 7225340 ~ 7240150 (-)
trnae-uuc_1 NA other downstream 578845 7023117 ~ 7023188 (-)
trnae-uuc NA other downstream 580388 7021574 ~ 7021645 (-)
LOC120571633 otx1,LOC102233826 other downstream 584374 6999171 ~ 7017659 (-)
akt3b akt3,LOC103470003,LOC103150748,LOC100692017,LOC108246299,LOC101174244 other upstream 35140 7648842 ~ 7690587 (-)
G2752 NA other upstream 126122 7739824 ~ 7763948 (-)
capn9 capn9 other upstream 322238 7935940 ~ 7957621 (-)
G2840 NA other upstream 593550 8207252 ~ 8209535 (-)
wipf2a NA other upstream 822097 8435799 ~ 8501162 (-)

Expression


Co-expression Network