pus10 (pus10)


Basic Information

Item Value
gene id pus10
gene name pus10
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7612923 ~ 7640109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819062.1
ACACGCCACCAAACTCTGCGTTTGccttgcattaaaaaaaaatggttgtctCACGCCGCTTGCTATATAGGCTACAATGGAAGAGGCTTCGATGGAAGCAACTCAATGCAAATCCCGGAGTCATGCTGCCGCTGAAGGAGAAGGATAAACCGATCGTCCAGAAGCTGCTGTCGGCCGGCTGCTGCGCTCGCTGCGTCCTCAGGTTCTGCTGCGTCAGCGTCCAGGCTGCATACAGACAACCCCAACAGGATACACTGGAAGAACTTCGAGCTTTCATCAGCGACGCAGAGGACAGCAAATCAAAAGATTCAACAGCGGCAGAGTCCACAGAAGGAAAGGACAATGATGCAGCATTATCAGAACCACCGAGTAAACGAGTGAAACTGGAGCCCAGCGGGACCGATCCTCCGTCAGAGGAAGCTGCTGCtggtcctgctgGTCCTGCTGCTGGTCctgctgatgctgatgctgcGGTCAAACTGGAGGATGgagagccgtgtgtgtgtgtggtgtgtttgggGATTTTACAGGACCTCTGTGGCCCGACCCCAGccgtgaagATAGCGGAGAAGGTGAAGGCCGAAAAGTACGAGTTCGACACCCTGgtgctgtctgtgtctctgcccGCTCAGCTGTGTGTCcgcgagCACTCCTGTTGGCTTCATGTAAAGAAGGAAATGAGAGAGAAGAGCATGGCGGTCGACAAAGACGACATCATCCAGGTGAAGGAGGCCTTTAAGTGGGTCATGCAGGGCCTGGTCGCCAAGGAGCTGGGGGGCGTTGCCGTGGTTACCAGGAGTCCGTTCGAGGTCGGTGTGGGGTTCACTCACCCGGAGACGGACGCCGACTGCCACTTCCTGGCATCGACGTGCGCCGACTGCTTCAAACCCACCAAGAACAAACAGTCGGTGTTCACCAGGATGGCCGTGGTCAAAGCTCTGGAAAAGATATCTGATGCCAAATTCCTAAAACATTACGCTTCACCACCAGCGCAGCCGACCAGCAGCTGCAGCCCTCAGGACGTCCAGTGTCTCCACGCGTCTGTCTTCGTAGCagGCAGGTACAACAAGTTCTGCCGCAGCCTTCCTCAGACCCCCTGGGTGATCGACGGCGAGCGGAGGATGGAGTCGTCGGTGGAGGAGCTGATCGCAGCGCCCCTCCTGTCTTCCTTCAGAGCCGACGAGTTTAATTTCTCCTCGTCTGGCCGGGAGGACGTGGACGTCCGGACTCTTGGAAACGGTCGTCCGTTTGCGATGGAGCTGCTGAACCCTCACCGGTCCCGACTCAGCCGAGTGGAGATGAAGCAGCTGCAAGAGACCATCAACGAGTCTTCGGACAAAATCCGAGTGAGAGACCTGCAGATTGTTTCCAGGGAGGCCATGAGTCGGatgaaggagggagaggaggagaaaaccAAGACGTACACGGCGCTCGTCTGGACCCAGAAACCCATTCAGAGTGAAGACATCGCCTTCATCGACCACATCAAGGATCTGACCCTGGACCAGAAGACCCCTCTGAGGGTCTTGCACCGCCGGGCGCTGGCCGTTCGCCAGCGCGTGGTCCACAGTATGAACACCCGCTTCCTGGACTCCCATCACTTCTACCTGGGGCTGAAGACGCAGGCCGGCACTTACATCAAAGAGTTTGTCCACGGAGACTTTGGTCGCACCAAGCCCAACCTGTGCGTGCTGCTGAAGACGGACACAGACATCCTGGAGCTCGACGTGGAGTCTGTCGACGTGGACTGGCCTCCGTCCATACAGGAGTGAACGCCACCGCTGCCGGCCTCGTCCTGTTTTCTGAGAGGCCACAGGTTCGATCTCCATGAGAGCGAGCTGGTGTTCGGGGTCGGGAGCGCTACACCGAACCCACGGAGCACGGTTCAGGGTCTTTCTGAGACCGAAAACACGACTGTGTAAAACGCCGCATGGAGGCGAAGAGGAAACCTGCGTCACCCGGTCCTGCCGGCTGCGTTGTGAAGCCGGCTCTCTTTACGTTCAGGTCCTGGACTGTATCTTCAGTTGTATCGCAGAAAATGTTTAATAGCACTTTCTAGTGGCTATGTTCTGTTGTCATTAGTTTCAGTTGATTACGGACACTGAGAcaattattttgttgtgttaagttttctgaaatgtgattattaaaggtgctctaagcgata

Function

symbol description
pus10 Predicted to enable pseudouridine synthase activity. Predicted to be involved in tRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUS10 (pseudouridine synthase 10).

NR:

description
putative tRNA pseudouridine synthase Pus10

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K07583 PUS10; tRNA pseudouridine synthase 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819062.1 True 2167 mRNA 0.56 19 7612923 7640109

Neighbor

gene id symbol gene type direction distance location
LOC120568176 NA coding upstream 175665 7390099 ~ 7437258 (+)
LOC120565053 NA coding upstream 373330 7238071 ~ 7239593 (+)
trnae-uuc_49 NA coding upstream 399367 7213485 ~ 7213556 (+)
trnae-uuc_48 NA coding upstream 399889 7212963 ~ 7213034 (+)
trnae-uuc_47 NA coding upstream 400918 7211934 ~ 7212005 (+)
LOC120570741 NA coding downstream 53476 7693585 ~ 7703831 (+)
LOC120563246 NA coding downstream 78847 7718956 ~ 7743994 (+)
LOC120563293 NA coding downstream 117577 7757686 ~ 7765391 (+)
LOC120563312 NA coding downstream 137753 7777862 ~ 7784253 (+)
LOC120565219 NA coding downstream 161068 7801177 ~ 7803946 (+)
G2512 cct4,LOC102790717,LOC104959023 non-coding upstream 9332 7602033 ~ 7603591 (+)
G2505 fam161a,LOC102790424 non-coding upstream 21847 7588643 ~ 7591076 (+)
G2486 NA non-coding upstream 55482 7554040 ~ 7557441 (+)
G2428 NA non-coding upstream 227570 7385132 ~ 7385353 (+)
G2386 NA non-coding upstream 369451 7241821 ~ 7243472 (+)
G2523 NA non-coding downstream 18295 7658404 ~ 7659023 (+)
G2524 NA non-coding downstream 19291 7659400 ~ 7660095 (+)
G2534 NA non-coding downstream 112604 7752713 ~ 7808364 (+)
LOC120563307 NA non-coding downstream 130604 7770713 ~ 7774926 (+)
G2545 ltv1 non-coding downstream 273643 7913752 ~ 7917581 (+)
G1973 NA other upstream 1078553 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1175706 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 1210283 6385601 ~ 6402640 (+)
snrpb2 snrpb2 other upstream 1696549 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 2141514 5387393 ~ 5471409 (+)
G2530 NA other downstream 59156 7699265 ~ 7699540 (+)
G2557 NA other downstream 301438 7941547 ~ 7948253 (+)
G2590 NA other downstream 449704 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 761606 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 977274 8617383 ~ 8643702 (+)

Expression


Co-expression Network