LOC120544367


Basic Information

Item Value
gene id LOC120544367
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48373491 ~ 48377153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636493.1
tctcccttttccacactttcactcgctgatacaacccaatctgaccggggatcagttactaattaattccactctttcaatctcaactcGTTCTTAGAAAACTGATCTTGATTCAGTGCgatgtaaacaacctgctctatgcccacccacctttatctttagccaatctacacagtgcatgcggccttctcccaatcattacattaaacaacttttactttattctgattggataattatcaCCATAATGATTAATGCCCATTGTGTAATACGGGCTTGATCGCAGTTTGacaacaaggggtgctgccaccaacaaggggtgctgccgcaCCCCCAGCACCCCTACTTCCCGCGCCTATGGCAGCTGCATCAAGAGGACGCGATTTTTCAACATTCATgTCCAGCTTTGCTCAGCGGTGGTTTGTGAGCGTGGAGGGCTAGGTTGTCAGTGAGGGAGTGTCCTTTGTGCTGGGGCTTGCTGTTCTAATGTCAACTTTCTACAACTTTAACCTGCAATACCAGGACTATGCTGCATGGTCGTTGGAGTTCATTCAGAGAATCTGCATGGGGATTAATCCTGAGAGAGGATCAAAGGCATACAGTGGACAGGCACCCAGCAGAAAAACTGGAAAGATGGTCCAGAAGAAACCATCAACAGTGAACCTGCATGTCTGCACCCTAATCAGGAAGCTCAACGACTTCAAGTGGGACTTTGTTTGATCTTCTCTCATAGCATTGTATTGTTTAGGTGCAGATACCATTTGTCAATTATCAATGAACAATATATGCCGATAAATACTGATCGATTTTgtgttgtttagtttagttattgCAGCTGATAGagctgtattattgtattgGCCAGTTTCCCTGTTTGCAGTGTATTGGGATCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636493.1 True 895 lncRNA 0.44 3 48373491 48377153

Neighbor

gene id symbol gene type direction distance location
neurl1aa LOC108246381,LOC103355274,LOC104926624,LOC102796982,LOC101477033,LOC102303708,LOC100693641 coding upstream 52634 48214304 ~ 48320857 (+)
LOC120543662 NA coding upstream 170737 48200870 ~ 48202754 (+)
si:ch73-6k14.2 NA coding upstream 1972126 46392846 ~ 46401365 (+)
LOC120562127 NA coding upstream 1999651 46346970 ~ 46373840 (+)
LOC120557716 LOC104930044,LOC103368287,LOC102204811,LOC102301891 coding upstream 2036158 46318376 ~ 46337333 (+)
LOC120564817 slc24a3,LOC100695245 coding downstream 120312 48497465 ~ 48609279 (+)
LOC120556912 rin2 coding downstream 234126 48611279 ~ 48704119 (+)
LOC120556923 NA coding downstream 337324 48714477 ~ 48721252 (+)
G12850 NA non-coding upstream 33975 48339192 ~ 48339516 (+)
G12849 NA non-coding upstream 34384 48338865 ~ 48339107 (+)
G12846 NA non-coding upstream 38754 48334225 ~ 48334737 (+)
G12845 NA non-coding upstream 41986 48330454 ~ 48331505 (+)
G12844 NA non-coding upstream 43738 48328015 ~ 48329753 (+)
G12932 NA non-coding downstream 221518 48598671 ~ 48601646 (+)
G12940 NA non-coding downstream 320384 48697537 ~ 48698140 (+)
LOC120564084 LOC100694180 other upstream 1248004 46846017 ~ 47125487 (+)
G12553 NA other upstream 1955718 46416428 ~ 46417773 (+)
trnak-uuu_1 NA other upstream 2165766 46207653 ~ 46207725 (+)
trnat-ugu NA other upstream 2166487 46206932 ~ 46207004 (+)
G12491 NA other upstream 2203802 46166405 ~ 46169689 (+)
G12872 NA other downstream 51647 48428800 ~ 48488219 (+)
G12873 NA other downstream 108095 48485248 ~ 48486493 (+)

Expression


Co-expression Network