LOC120558606


Basic Information

Item Value
gene id LOC120558606
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14105951 ~ 14108693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639156.1
TTGAACACCATCACATTTATTTCTGGTTTGTTTCAGTATGTATTTTGCGttcaaaaaatgaaagaaatgtgcatatgtttgtttgtttgctggcaGAGGATACATTTTTAGTTAGTTATTCCAGCCACTAGGTGGCGGTGTCACACGCCAAGAGTTGCGCGGTGCCTCTTGGtcgctctctttttcctttcggGCCGATCAGGGAAACAGCATGGTGGAGAATCCTGAGTACATTGTGTGAAATAAAAGGacatCAGAGTGACAAGTGTATGACGTTGTGCGCTCCCTGGTGAAGCCCGTTTTTCAGAgtctgcattctgggaaatgCCTTTCTGCCAAATTGAAAATACTGCCAATGTTACAGAAATAAACTAACCCCGAAGAAGTTATTGTGTCCTGTGTGGGTCTTAGTTCAGCAGGCTACATCAGCCAAGAGAATGAGAAATAATGAAAAGAGGTCAAATACACAAGGAAGAAGCAAAAAACAGCATCAGCACGGACACAGAAGAGAAAATCAAGCAATTCTTGGAAAGAGATGAAAACAGCAGAgcaacaagacaaaacaaaagtgATTCCTTAATGAACTCATGGAAATACTTCATGAGAAATTTAAGAAGGAGTATCCTGGCATACAGATTTCTTACAGTGATTTCTGCAAGAAACGTCCTTTTTGAATTATAGATCCCACAATTaaggacagagacacatgcaTATGCAAGACGCATGCCAATATGCAGTTAATGGCAGACAAACTGCTGCAGCACAAAGTGATCAACAGCACTAAAATTGAACATTTGGTTGTCTCTCTGTGCTGCTCACCATACATCAAGGAGTATATGTACAGAGAATGTCCCAACTGTGTGGACAAAGAATTGCAGATCTCGGCCTTTGACCCTGGGGCCCAGAGATATTGGCACGCAAGGCAAAagctgtggagagagagaagataaaGAAAGATGGAACTAAAGAGAAAATCACAGTTCATCTCACTGTTAAGGAGAAAATAGAGGGCACACTGCATACTTGACTAGAAGACTTTTCAACAGATCtaagacaaaaacttggaaagcATGTGTATAACATCAGGGTATCAGTATGCAGCTCTCCGTGGCCTAAAGGAAAACTTGAGAGAGAACAAAGTCATTCTGCATATTGATTTTGCAGAGAACTTCCAGTGCAAGTACAACAGTGAAGTCCAGGTGGTACATTTTGGAGATTCCCATCACCAGGTCTCACTCCATACTGGTGTGGCCTACACCTGGAAGGATGTAAAGTCATTATGCTCAATCAGCTCTTCTTTTCGGCACGATCCCTCAGCGATATGGGCACATCTAACCCAAGCGCTAACTTACTTGAGAGAGCAACATCCCGCTGCCACCATACTTCATGTGGTCAGTGACGGACCAACGACGCAATACCGCTCAAAAAAACTTCTTCCTCCTCACCAATGTTCCTTACCAAATGGATTGGAAAAGGGTGACCTGGAATTTCTTAGAGGCTGGCCACGGCAAAGGCCCAGCTGATGGGATTGGAGCGGTGGTGAAGAGAGGATGATCTTATTGCAAGAGGGAGGGACATTCCAGACGCACGAGTACTGCTTGAGGAGCTTAAGCAGAAAAAGTCTGCCACCGAGCTTTTCTATATTGAGCTGTTGAGGCAATGGATGTTCACGTTCCATCTGAATTACAGACAATTCGTGGCATGATGAAAATTCATCAGGTATGGTCTCGCTGTTGCttctttatacattttttggTCTTGCTGTTGTTTCTTAACACAAGTTATGACTAATTGAATGCTCTGACAGCCTTGAAGATGACCTCTCATTCTCCAAGCCAGATGTCATGGAGGATTCTTAGTTGTTTTTGCTCTGCACCCAACGATTGCAACAGTTTCACACCAGAAACAGTCAGGTTTCAGCCATGGGATGAAGCTACCCCCACAACCAAGTACACTTCCTGTCACATCCCAAGATGGAGGTCTGCAACCAATTTTGGACTTGCATGAGGGTCTCATCGATCAGTGGTGTGCAGTGGTGTATGATGGAGATGTGTACCCAGGTATTATTCAGGATGTTGAGTTATACAGTGTTGCTCAAGTGAAAACAATGACCCGTATTGGGATGAATCGCTTTTATTGGCCACTGAGAGATGATGTCATCTGGTACCAACCCATGGATATAATAGGCCTCATCCCCTGAGCCCGTACCAGTGACAAAACGGCACAAGGAGATTAAGACGGAAGTTTGGAAAGAAATCTGCAAGATTTGGCCTTGAATCACATtgccaccctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639156.1 True 2321 lncRNA 0.44 3 14105951 14108693

Neighbor

gene id symbol gene type direction distance location
LOC120558590 NA coding downstream 10082 14093285 ~ 14095869 (-)
LOC120558573 NA coding downstream 46054 14056622 ~ 14059897 (-)
cdc37 LOC103374849 coding downstream 54199 14044322 ~ 14051752 (-)
LOC120567316 NA coding downstream 122321 13959135 ~ 13983630 (-)
LOC120558259 NA coding downstream 146980 13948209 ~ 13958971 (-)
LOC120558598 NA coding upstream 18772 14127465 ~ 14132932 (-)
LOC120558610 NA coding upstream 32622 14141315 ~ 14146842 (-)
LOC120567413 LOC104965219 coding upstream 41636 14150329 ~ 14179046 (-)
LOC120557653 LOC103366227,LOC103383461 coding upstream 72457 14181150 ~ 14203254 (-)
thumpd1 thumpd1,LOC102789252 coding upstream 113031 14221724 ~ 14224399 (-)
LOC120558586 NA non-coding downstream 26952 14078317 ~ 14078999 (-)
LOC120558581 NA non-coding downstream 34404 14067848 ~ 14071547 (-)
G4359 NA non-coding downstream 49494 14055443 ~ 14056457 (-)
G4354 NA non-coding downstream 60232 14045360 ~ 14045719 (-)
LOC120558530 NA non-coding downstream 338095 13765193 ~ 13767856 (-)
G4443 NA non-coding upstream 188396 14297089 ~ 14297452 (-)
G4450 NA non-coding upstream 330763 14439456 ~ 14439663 (-)
G4566 NA non-coding upstream 742268 14850961 ~ 14852833 (-)
G4658 NA non-coding upstream 860788 14969481 ~ 14970706 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding upstream 862687 14971380 ~ 14973191 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 63441 14018902 ~ 14042510 (-)
G4168 NA other downstream 538685 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1065671 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1077558 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1239912 12865968 ~ 12866039 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 603451 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 792453 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 1317851 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 2237025 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 3303360 17412053 ~ 17421098 (-)

Expression


Co-expression Network