LOC120559549


Basic Information

Item Value
gene id LOC120559549
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10068489 ~ 10070063 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639312.1
CAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGATTGTTGTAGCAGATAAATcaacaataacaatgataacAAACAGCATCAGGTTGACTctggtgggggttggggggctgattcctctgcttcttttttgtcgGTGGATGAGGAAGAAGAAAGCTCTGAGCTCCACCACTGAACCAAATGAACCCATAGAGACTgtggagTTAGACTCTTGTCCTGAGTATGAGGACATCTCAGAGACTGCAGCACAGACAGAAGACACAGAGGAGCAGGAAGACCTGGTGTGAGGGGGGGATTCTGAGAAAGAACTCATCAAAACTTTATGTGGTTTTCTTCACATGCAGTCAAACCAGAGGGAGACTCACATgtaggaaaacaaaaagaagtCTTTAACTCCAAACTTTTTCATTCTCAGTTTTTTAGAAGCAGCAGGTAGCAGAAGATTAGAgaagaatgcagctttatttgtacctGTGCAGGTACATAACAGAACTGAACTCAGTTCAGGATTTGACTTGGTATGCAAAGTGATATTTTATGTAgtaaattactttaaaaaaattttgttCACCTTTTCACATCACACCTGTCCTGGCAGAGAAAGCCAGTAAAGTCCATCTATTCCACAACATGTACAGTAAATCTTATATGGTATATTTTTACACATTGAAAAACATGAGCTCAGCTCTGTCAAACTTTGCTAGTTGTTCATTTGTATTGAatgaattgtattgtattgcatGTATTGTAGTGTGAACATGATGCCAGTtccctctcactgctgcagagggAGATAGTGTTCAGGTGCAAGCTTTTGATTTCAGCTTTAAACAAACTCTTTTTGTGTTCATTCTTCAGAATGAAGTTTTTATTGATCAGTAATGAGtgcaaatacaatttaaatCAGTTGGTATGATCTGATGTATTTCTCACGCCCAATGTTGTCCATCTGTAAAACTTGTCACAGTGTAATAAAGCTTTACTCTGGTGAACAACCTAAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639312.1 True 1074 lncRNA 0.39 4 10068489 10070063

Neighbor

gene id symbol gene type direction distance location
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 480523 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 578749 9477680 ~ 9489740 (-)
LOC120559457 LOC103383201,LOC105931257 coding downstream 656132 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 736935 9304947 ~ 9331554 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 821584 9165988 ~ 9246905 (-)
LOC120565745 NA coding upstream 102022 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 427260 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 509222 10579285 ~ 10624015 (-)
ccdc130 ccdc130 coding upstream 555261 10625324 ~ 10631727 (-)
wdr83 wdr83,LOC102798015 coding upstream 577014 10647077 ~ 10655066 (-)
G3406 NA non-coding downstream 26843 10021625 ~ 10041646 (-)
G3409 NA non-coding downstream 42259 10025783 ~ 10026230 (-)
G3347 NA non-coding downstream 67862 9994697 ~ 10000627 (-)
LOC120559605 NA non-coding downstream 70904 9996875 ~ 9997585 (-)
G3396 NA non-coding downstream 87491 9921320 ~ 9980998 (-)
G3418 NA non-coding upstream 2263 10072326 ~ 10072973 (-)
LOC120559577 NA non-coding upstream 3038 10073101 ~ 10073828 (-)
G3421 NA non-coding upstream 18555 10088618 ~ 10099262 (-)
G3424 NA non-coding upstream 28994 10099057 ~ 10100398 (-)
G3439 NA non-coding upstream 89161 10159224 ~ 10160809 (-)
G3373 LOC103359075 other downstream 26485 9840590 ~ 10042004 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 427975 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 500644 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 1160403 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 1300516 8758649 ~ 8767973 (-)
G3586 LOC104950333 other upstream 829495 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 896299 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2571950 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 2734439 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 2790221 12860284 ~ 12860355 (-)

Expression


Co-expression Network