XLOC_004616 (zgc:174153)


Basic Information

Item Value
gene id XLOC_004616
gene name zgc:174153
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16949391 ~ 16951851 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009151
AGTCAACAAGGTTTGCTTGTGAAAGtcTTCCAGGCAGAATGATGTTTGCTTTGATCATCACGCTGTGCATAAGTGCAGTGTTCACTGCTCCATCTATAGACATCCAGTTAGACGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCAGACGTCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACAGGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGGTATGACCCCCGTTTTAATGTAGCTAAAATCACCGGATTCGTGGACATCCCCAGTGGTAATGAGCCTGCTCTGATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTAGCAGTAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCGTTGCGACAAAGGCCAGCTATCCCCTAATGTAAGGCCACTGAAGCCTTCTCTGCATTCTGAAAAAGTCACGTTTATTGTTTctctattttaatgtgtttttatttcttctaTTTTATCAAGTTGTTCTGATGTTAGTGCTATGATATGTAGTTGTCttactttgttattttttcttttgtttaataaaGTGTCATGGTTTTAGTTTGGAACACTGAAAATA

Function

symbol description
zgc:174153 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-7 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDARG00000079376

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009151 True 1237 mRNA 0.44 8 16949391 16951851

Neighbor

gene id symbol gene type direction distance location
XLOC_004615 NA coding upstream 74688 16742395 ~ 16874703 (+)
XLOC_004614 NA coding upstream 364337 16583373 ~ 16585054 (+)
XLOC_004613 NA coding upstream 379347 16567854 ~ 16570044 (+)
XLOC_004612 NA coding upstream 457585 16490198 ~ 16491806 (+)
XLOC_004611 NA coding upstream 461824 16486965 ~ 16487567 (+)
XLOC_004617 pank1b coding downstream 1564 16953415 ~ 16964840 (+)
XLOC_004618 dre-mir-107a coding downstream 8842 16960693 ~ 16960781 (+)
XLOC_004619 slc16a12b coding downstream 15864 16967715 ~ 16986968 (+)
XLOC_004620 ch25h coding downstream 90903 17042754 ~ 17043874 (+)
XLOC_004621 acta2 coding downstream 148170 17100021 ~ 17116481 (+)
XLOC_004624 AL731788.1 non-coding downstream 393699 17345550 ~ 17345667 (+)
XLOC_004625 NA non-coding downstream 472580 17424431 ~ 17427380 (+)
XLOC_004634 BX005075.1 non-coding downstream 1173807 18125658 ~ 18125774 (+)
XLOC_004635 NA non-coding downstream 1258020 18209871 ~ 18228004 (+)

Expression


Co-expression Network