LOC120559598


Basic Information

Item Value
gene id LOC120559598
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9793232 ~ 9795990 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639329.1
taaagatggctAGGATAAACTTTATTTCACAGTGCAAGTGGACATTGGATGACTGCACTCGTCTTCTGAAGACCGATGTTGTCGGGCCTTCTCTGTTGGAATCCACATTAACAAGCCAGTTCATCTTACCAGGCTCCACTGGCTTGGACTGGTGCTAGAGGTCTGCCTCACTTTTCCATCTCTCCAGAGCAACTATCTTTCCTGAAATCATGTGGCTTTACAGTGTCACAGACTGCAGATATTCTGCATGTTTCTCCAGCTACAGTCAAACGACGTTTGAAAAGAGGAGATGGATATTTCCTTCGAGGAGTTGCTGGTGTTTGTGACAGGGGCCGATTCTATCCCCCCTCTTGGGTTCCCGCAGAAATGCCAGCTTGACTTCTATAATCAGGAGGATGGGAGCTGCTGCATTCCTTATTCATCAACATGTAGCCTTTGCCTTTTCCTCCCGAGGGGTTACAGAAGAAGAGGAGTTCACAAGACTTATGTTCCTTGCCCTGAAAGGGTCTCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639329.1 True 514 lncRNA 0.47 3 9793232 9795990

Neighbor

gene id symbol gene type direction distance location
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 205266 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 303492 9477680 ~ 9489740 (-)
LOC120559457 LOC103383201,LOC105931257 coding downstream 380875 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 461678 9304947 ~ 9331554 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 546327 9165988 ~ 9246905 (-)
LOC120565745 NA coding upstream 376095 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 701333 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 783295 10579285 ~ 10624015 (-)
ccdc130 ccdc130 coding upstream 829334 10625324 ~ 10631727 (-)
wdr83 wdr83,LOC102798015 coding upstream 851087 10647077 ~ 10655066 (-)
G3367 NA non-coding downstream 20297 9771572 ~ 9772935 (-)
G3361 NA non-coding downstream 28184 9701071 ~ 9765048 (-)
G3368 NA non-coding downstream 38204 9751329 ~ 9755028 (-)
G3348 NA non-coding downstream 97223 9653783 ~ 9696009 (-)
G3352 NA non-coding downstream 109588 9647605 ~ 9683644 (-)
G3376 NA non-coding upstream 68092 9864082 ~ 9864948 (-)
G3386 NA non-coding upstream 73710 9869700 ~ 9870087 (-)
G3387 NA non-coding upstream 76587 9872577 ~ 9875813 (-)
LOC120559540 NA non-coding upstream 102906 9898896 ~ 9902061 (-)
G3396 NA non-coding upstream 125330 9921320 ~ 9980998 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 152718 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 225387 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 885146 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 1025259 8758649 ~ 8767973 (-)
wipf2a NA other downstream 1292070 8435799 ~ 8501162 (-)
G3373 LOC103359075 other upstream 44600 9840590 ~ 10042004 (-)
LOC120559237 LOC103359075 other upstream 62090 9858080 ~ 10211304 (-)
G3586 LOC104950333 other upstream 1103568 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 1170372 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2846023 12642013 ~ 12659983 (-)

Expression


Co-expression Network