LOC120559609


Basic Information

Item Value
gene id LOC120559609
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10211424 ~ 10212875 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639334.1
CTGTCTTCTGCTTGCCGTACTGACCCCAGAGGAGTATTATCTTTCAAGACGACATCTCTCTCTGTTATGAGAGGAGCAGCTATGAGTTTAACTGCAGCAGTGAGgggatttgttttcttccttctctctgtATCAGTGATACAGGGTCAGGATTACTGGGGAGTGACTTACACCTCTACTCAGATCTGTGCCTTCAAGAGATCAACCGTGGACATACCGTGCACCTACAGA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639334.1 True 231 lncRNA 0.47 3 10211424 10212875

Neighbor

gene id symbol gene type direction distance location
LOC120565745 NA coding downstream 29437 10172085 ~ 10181987 (-)
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 623458 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 721684 9477680 ~ 9489740 (-)
LOC120559457 LOC103383201,LOC105931257 coding downstream 799067 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 879870 9304947 ~ 9331554 (-)
LOC120567750 LOC103370659 coding upstream 284448 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 366410 10579285 ~ 10624015 (-)
ccdc130 ccdc130 coding upstream 412449 10625324 ~ 10631727 (-)
wdr83 wdr83,LOC102798015 coding upstream 434202 10647077 ~ 10655066 (-)
ier2b NA coding upstream 711796 10924671 ~ 10926308 (-)
G3439 NA non-coding downstream 50615 10159224 ~ 10160809 (-)
G3424 NA non-coding downstream 111026 10099057 ~ 10100398 (-)
G3421 NA non-coding downstream 112162 10088618 ~ 10099262 (-)
LOC120559577 NA non-coding downstream 137596 10073101 ~ 10073828 (-)
G3418 NA non-coding downstream 138451 10072326 ~ 10072973 (-)
G3493 NA non-coding upstream 411905 10624780 ~ 10625062 (-)
G3498 NA non-coding upstream 444461 10657336 ~ 10662561 (-)
G3557 LOC103372545 non-coding upstream 620695 10833570 ~ 10833876 (-)
G3566 NA non-coding upstream 665816 10878691 ~ 10878890 (-)
G3580 NA non-coding upstream 670272 10883147 ~ 10883412 (-)
LOC120559237 LOC103359075 other downstream 120 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 169420 9840590 ~ 10042004 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 570910 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 643579 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 1303338 8905672 ~ 8908086 (-)
G3586 LOC104950333 other upstream 686683 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 753487 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2429138 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 2591627 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 2647409 12860284 ~ 12860355 (-)

Expression


Co-expression Network