LOC120562219 (LOC107384803,LOC107386814)


Basic Information

Item Value
gene id LOC120562219
gene name LOC107384803,LOC107386814
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34264560 ~ 34270464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639708.1
TTGTGTGTGACATTGATCTggcgttggtgagtaggagtctTGGCAGTGGCGATatttgtgtggtagtttccttagccgggCAAGCAGGCCCGACCGGCGTCCTTGCTTCTCCATCCTCCCCGCCTTCCTCGCCTGCCGCGGCCGACAACAATACAACGAGTGCCCGCtagtctggtggatgtcctccagaggacaggtcatgcctTCACAGCAAAAAAATTTAGTTTATATCAGGGTTCTAAATTAACACCCACCAACCCGTCAAATGCTGGTTAAAATTAATTTTGGCGGGTGTTAATAAACACTTACTAGCCAGTTTGGCTGGTGATGCATGAGACATTACATGCATGATACATCCGTCCTCGGTCATTTATCCCCCTGGCAGTACTTCCTACATTTCCCAAGAACATTGTGCCGTAATGCTGCGTGATGACATTTCATACTCCCATTGGCTGCGCGCAGTCTGAAGCGAAACCAGCGCGAGAAACCATGGAAACGAACGGAGCCAGAGCAGGGAGCATAGACTGAAAGAATAGGGAGTTAgctagtaaagtaaagtaaaaagttaAGATTAAACTAAATGCGGCAGTGGTTGGGTCAGACTTCTGGGGGCGAGAAGAGGAACGAGGCAGGGGATGAGGATATTGACAGAGAAacgaagaaaagaaaatgtaatgccAAATGGCTGACGGGTCGTGAATGGCTTGTGTTTGATCACGAAAATGTCGTCATGTTTTGTCAGGACTGCCACATGTAtgcgaaagaaaaaaacaaaacgaacAATTTGGTGGTAGGAACTAATAATTTTAAAGTCGAGGTAGTAAAGGACCATGAGAGTGCCCGAAGTCATCAGTAGAGCCTAAGGATTAAAACTGCCAAGACAGGTCATATTGAAGAGAGCCTTACCGGGAGAAGCCTTGCTTTATTGAAGACGTGAGAGTTGGAGAAGATGCAGCTACTTTTTCAGAATGCCCACCCCATTGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTGTGAGTAAGTGAATTAACGTTACTATTTACATGTTTCAGAAACAGTGCATTTAATACAATTCAGAGTGCTTCCATAAACACAGATGAAACTTTACGTTTGGGGGtttcaaaaagaagaaaaaaaatctcactGAAATGTACTGTGTGCTAACAGTGGCTTCATTTACACGAAAATTTATTTCAGGGTGGACAGGAAGAAAGGCTTGAAGATAGGAGAGACGTACACAAATGACTACCAGGCAAAAGAGTTCATAAACTACATAGCAGAGGATGAGAGAAGAAAGATGAGGGCAAGATTATCAGATGGCAAGTTAATCTCGGTCATGTCAGATGGATCTCTCGACAGTGCAGCGATGGAAGAAGAAATGGTCTACGTCAGGAGTACCAGTGAGGGGAAGGTCAAAGTTGATTTTGTCGGGTTAAAAGCTGTCTCGAAGCCAGATGCTACAAATATAGCTGAAGCAGTGTGCAGTATAATGGAAAGTGGAGTCAGCACTGATTGGAAGAACAAGCTAGTGGCAATCACCACAGATGGAGCATCTGTAATGACAGGAGTAAACAGTGGTGTAGTTACAAAACTGCGTGCAGACAGACCAAATGTGCTGGGGATCCACTGCATGGCCCATAAGCTAGAGCTTGCCTTTACAGACGGAATAAGGAAAAATGTGATGGCCAGGAAAGTTGAGGACCTGTTGAGTGGACTCTACACCTTATATCATAAGAGTGGAGTGAACAGGGCCAGCCTAAAGCAACACTTCAGGGAGCTCCACATGAAGGCTTTGATGCCAACCAGAGTAGGTGGAACCCGGTGGCTACTACATCTTTTCAAAGCACTTGACCATTTTCTCAGGGGTTATGCTGGCATTGTACGCCACTTGGAGGAGAAGGTATGTTAATATTGAGCCTACTAAAACCAGCAGTGTAGATGGATTATTTAAtgtttgctttctttttctcttcatcAGTTTTAAATGCTGTCTGATATAATGCAGTTGTTTTGCTTGTAGTCCCAGGAGGCCACGAACATCAATGCTGTTCTGAGGCCAAGGGGTTCCTCAACATAGGCAAGGATGGTGGAGTGCTCAGGTTTTGCTGCCTTCTCCATGACACCATCTATCAACTGAGCAACCTCTCCAAGTCACTGCAGAGGTCAGTGTCAACCCTGGCTGAAGCTTAGAGCTGCCTTTCCTCCACTCAGGCCGTCATAGAAAAGTATAAGTCAAGACCTGGGCCTAAGCTGAGAGCAGTGCTGGACACAGACTCCTATGAGTGCCGACCAGCATGACAAGGCAAAGAATGAGCTAATTGATTCTCTGTACCGGTGCATCACTGCTAGATTTAGTGATGTGAAGAGTGGTGTCCTGCAGGCTATGCGGCTGACCAGTTTCCAGTGCTGGCCAGAGGCAGACACAAGTTCAGATTTTGGTGATGAAGAGGTAAACAATCTCATCAGTCACTTCCGACCTCTTTTACTGTCTGCTGGAGTGGATGTGGAGTTGATCCCTGATCAATGGACAATTCTCAAGACTTAACTGCACACAGCAGGATTCAGCCAAGGAACCTTTGAGAAGACCTGGCCTACTGTGAACAAAATGCTTCGCCATCGGTGTCCTGATGTCCTTGATCTTTTTGATGCTCTACCCACGATCCCTGCAGCTACACCTGACTGTGAAAGAGGGTTCAGTGTTATGAAGCAGGTAAAGAGTGACTGGCGCTCACGCCTAAAAATTGAGACCCTCTCTGACCTCCTTAAAACCCAGTTGTGCTCACCTGACATCAAAGACTTTGATCCAACCAAAGCCATTGACATCTGGCATGCTGACAGTTTGCACTTACGCAGGCCTGACTTTGTGCACAAACATGGAACAAAAGGAACAGagGGTGGCTCAGATTCTGATGGCACCACCtctgaagaagaagagctcTGAAGACATGCGATTcaaatgatagatagatagatagataggtaggtagatag
>XR_005639709.1
TTGTGTGTGACATTGATCTggcgttggtgagtaggagtctTGGCAGTGGCGATatttgtgtggtagtttccttagccgggCAAGCAGGCCCGACCGGCGTCCTTGCTTCTCCATCCTCCCCGCCTTCCTCGCCTGCCGCGGCCGACAACAATACAACGAGTGCCCGCtagtctggtggatgtcctccagaggacaggtcatgcctTCACAGCAAAAAAATTTAGTTTATATCAGGGTTCTAAATTAACACCCACCAACCCGTCAAATGCTGGTTAAAATTAATTTTGGCGGGTGTTAATAAACACTTACTAGCCAGTTTGGCTGGTGATGCATGAGACATTACATGCATGATACATCCGTCCTCGGTCATTTATCCCCCTGGCAGTACTTCCTACATTTCCCAAGAACATTGTGCCGTAATGCTGCGTGATGACATTTCATACTCCCATTGGCTGCGCGCAGTCTGAAGCGAAACCAGCGCGAGAAACCATGGAAACGAACGGAGCCAGAGCAGGGAGCATAGACTGAAAGAATAGGGAGTTAgctagtaaagtaaagtaaaaagttaAGATTAAACTAAATGCGGCAGTGGTTGGGTCAGACTTCTGGGGGCGAGAAGAGGAACGAGGCAGGGGATGAGGATATTGACAGAGAAacgaagaaaagaaaatgtaatgccAAATGGCTGACGGGTCGTGAATGGCTTGTGTTTGATCACGAAAATGTCGTCATGTTTTGTCAGGACTGCCACATGTAtgcgaaagaaaaaaacaaaacgaacAATTTGGTGGTAGGAACTAATAATTTTAAAGTCGAGGTAGTAAAGGACCATGAGAGTGCCCGAAGTCATCAGTAGAGCCTAAGGATTAAAACTGCCAAGACAGGTCATATTGAAGAGAGCCTTACCGGGAGAAGCCTTGCTTTATTGAAGACGTGAGAGTTGGAGAAGATGCAGCTACTTTTTCAGAATGCCCACCCCATTGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTGTGATCCCAGGAGGCCACGAACATCAATGCTGTTCTGAGGCCAAGGGGTTCCTCAACATAGGCAAGGATGGTGGAGTGCTCAGGTTTTGCTGCCTTCTCCATGACACCATCTATCAACTGAGCAACCTCTCCAAGTCACTGCAGAGGTCAGTGTCAACCCTGGCTGAAGCTTAGAGCTGCCTTTCCTCCACTCAGGCCGTCATAGAAAAGTATAAGTCAAGACCTGGGCCTAAGCTGAGAGCAGTGCTGGACACAGACTCCTATGAGTGCCGACCAGCATGACAAGGCAAAGAATGAGCTAATTGATTCTCTGTACCGGTGCATCACTGCTAGATTTAGTGATGTGAAGAGTGGTGTCCTGCAGGCTATGCGGCTGACCAGTTTCCAGTGCTGGCCAGAGGCAGACACAAGTTCAGATTTTGGTGATGAAGAGGTAAACAATCTCATCAGTCACTTCCGACCTCTTTTACTGTCTGCTGGAGTGGATGTGGAGTTGATCCCTGATCAATGGACAATTCTCAAGACTTAACTGCACACAGCAGGATTCAGCCAAGGAACCTTTGAGAAGACCTGGCCTACTGTGAACAAAATGCTTCGCCATCGGTGTCCTGATGTCCTTGATCTTTTTGATGCTCTACCCACGATCCCTGCAGCTACACCTGACTGTGAAAGAGGGTTCAGTGTTATGAAGCAGGTAAAGAGTGACTGGCGCTCACGCCTAAAAATTGAGACCCTCTCTGACCTCCTTAAAACCCAGTTGTGCTCACCTGACATCAAAGACTTTGATCCAACCAAAGCCATTGACATCTGGCATGCTGACAGTTTGCACTTACGCAGGCCTGACTTTGTGCACAAACATGGAACAAAAGGAACAGagGGTGGCTCAGATTCTGATGGCACCACCtctgaagaagaagagctcTGAAGACATGCGATTcaaatgatagatagatagatagataggtaggtagatag

Function

NR:

description
PREDICTED: uncharacterized protein LOC107384803

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639708.1 True 3000 lncRNA 0.46 5 34264560 34270464
XR_005639709.1 False 1997 lncRNA 0.48 6 34264560 34270464

Neighbor

gene id symbol gene type direction distance location
frg1 NA coding downstream 659428 33592642 ~ 33605132 (-)
asah1b asah1,LOC102779657 coding downstream 675519 33580853 ~ 33589041 (-)
sart1 sart1 coding downstream 713003 33548703 ~ 33551557 (-)
LOC120564990 LOC104967107,LOC102294790,LOC103370278 coding downstream 717177 33539583 ~ 33547383 (-)
casp3a LOC103370277 coding downstream 729504 33528419 ~ 33535056 (-)
LOC120564947 LOC101485601,LOC102207182,LOC103357494,LOC100703355,LOC102781869,LOC102299071 coding upstream 119684 34390148 ~ 34400994 (-)
tlr3 NA coding upstream 134588 34405052 ~ 34411361 (-)
npy2r NA coding upstream 246323 34516787 ~ 34521757 (-)
LOC120561135 lrat,LOC103357487,LOC103156491,LOC107094918 coding upstream 256589 34527053 ~ 34529098 (-)
LOC120557822 LOC104965748 coding upstream 286509 34556973 ~ 34560875 (-)
G9673 NA non-coding downstream 41453 34222887 ~ 34223107 (-)
G9639 fat1 non-coding downstream 77783 34023083 ~ 34186777 (-)
G9658 NA non-coding downstream 78781 34102592 ~ 34185779 (-)
LOC120575231 NA non-coding downstream 491139 33771863 ~ 33773421 (-)
G9618 NA non-coding downstream 542487 33721843 ~ 33722073 (-)
G9695 NA non-coding upstream 59253 34329717 ~ 34329965 (-)
G9730 NA non-coding upstream 84544 34355008 ~ 34355326 (-)
G9732 NA non-coding upstream 94552 34365016 ~ 34365278 (-)
G9745 NA non-coding upstream 192494 34462958 ~ 34468183 (-)
G9747 NA non-coding upstream 203708 34474172 ~ 34478450 (-)
stox2a stox2,LOC100702551,LOC102293991,LOC101478850,LOC102775740 other downstream 739045 33497102 ~ 33525515 (-)
tapt1b tapt1,LOC104934196,LOC102290950 other downstream 900335 33306785 ~ 33364225 (-)
G9488 NA other downstream 980480 33283078 ~ 33284080 (-)
G9418 fbxw7,LOC104948758 other downstream 1129640 33092460 ~ 33134920 (-)
lrba NA other downstream 1483406 32584724 ~ 32781154 (-)
G9740 NA other upstream 182386 34452850 ~ 34457635 (-)
G9997 NA other upstream 1128176 35398640 ~ 35400474 (-)
rgs12b rgs12,LOC104946104 other upstream 1134351 35404815 ~ 35451211 (-)
LOC120572869 NA other upstream 1314006 35584470 ~ 35586613 (-)
micall1a LOC100693188 other upstream 1673584 35944048 ~ 35969266 (-)

Expression


Co-expression Network