LOC120562689


Basic Information

Item Value
gene id LOC120562689
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29097909 ~ 29102324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639809.1
CTCTTGACCTCAGTATTTCTAAAATCCCGGCGGTGGCCCTAGGGGTAGTGTtataaaagttacatattgttaGCTAGGTTGTGAATGCTTGGAGATAAATGATACAGCAACCGGGAAGGACACACCAGCAAGGAAAGGGAACCCTGTGATCAAAATAGGCACTGCAACCATGCTAGTACGATGAAACCTTACGACCTGGCTGAGAGTGGCCTCCTCCCTCCCCAcatcttgacattttcagcagcACAGACAACCAAAAGCAACCTCTAACAGCAACAATTCCAGTGATCAACTTCAGCTCAATTCTGAGATCTCGCTCCACCTCTGAGAAAATACAAGAAGAAGACACAGAGCAACCCAGAACCAAGACTTTTCTGTCCAGAAACATGGTCCCACCTTGGCACAGATCAGAAGGCCCATGTTGTACATAGTCATGACAAAGAGTTTTGTTCATGCCAGTGCAGCTGCCATCTCCTCCGGGTCCTGATGAGAGGCGGCAGATGGGTCACCAAGACCTGAGGATTGCCTGCAAGAtctgcttcaaaatgtcacTGCAGCAAACTTAATTTGCATTTACCTCTTGAATGGAAAAGCACTGACAGAGGAAATCTGGAGTACTTCTGTCATATagaatgaattattttgacatgTTGTCATGCAGTGATttcaatttttcttttgttaGGCATACTGGGAGCTAAAATGGTTAATCACATACAAGCAATCAAAATCAATCATCTAAACGAGCAGATTGTCAGTACAATTTGAATAAGCACATTTTACAGGCCCAGTACACATAGCCGATTTGTAGTGTTGACCTCATTTATTTAGTCTTCATCATCTTGTACTTTTAAGCGAATGTGCTTGTAAAATGAATAAGTCCTCTTCCTTGAAAAATAAGAGCATGTGAGATGTTTAACAACCTTTATCAGCTCAGGTGGTTTCTAAAAGCAGGCATGTTTTCCAGGACCCTCACATTTAGATACAGCTGGTTTAACGTAGCCCTGACAGTACTGTACGTTCTTAATGTGACAGCTCAGTCTCAATGAACTTCATCCTAAATCCCTTCTCTTAAATTTAATAAGGATTAAGGAGATTCTTCTCATAACAGTACATACAAGATTTATACAAAGAATTTTCAATAGACTATGGAAttttaaaggttaaagaagtCCAACAAATCAAACCAAGAGTCAGTGATAAGGTTCAACCGGGGGCCAGTTTTTTTCAGGAATGTTCAGTACAGAAGTTGTGGAGATGCAGGCAGGCATGGtttcaatatgtttattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639809.1 True 1291 lncRNA 0.41 3 29097909 29102324

Neighbor

gene id symbol gene type direction distance location
gucy1a1 gucy1a3 coding downstream 3991 29083928 ~ 29093918 (-)
gucy1b1 gucy1b3 coding downstream 14902 29067272 ~ 29083007 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding downstream 43823 29052260 ~ 29054086 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding downstream 90753 29003269 ~ 29007156 (-)
LOC120562596 NA coding downstream 96989 28995088 ~ 29000920 (-)
slc25a4 slc25a4 coding upstream 14796 29117120 ~ 29119390 (-)
helt helt,LOC102781250 coding upstream 47199 29149523 ~ 29151442 (-)
primpol primpol coding upstream 79737 29182061 ~ 29194904 (-)
tacr3l LOC103361415 coding upstream 97083 29199407 ~ 29206708 (-)
cldnd1b cldnd1,cldnd,LOC103360955 coding upstream 119940 29222264 ~ 29230841 (-)
G8486 NA non-coding downstream 80923 29012425 ~ 29016986 (-)
G8438 NA non-coding downstream 182090 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 238838 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 285690 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 290461 28806945 ~ 28807448 (-)
G8572 NA non-coding upstream 118888 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 139288 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 180508 29282832 ~ 29283044 (-)
G8584 NA non-coding upstream 187976 29290300 ~ 29290813 (-)
G8609 smox non-coding upstream 262142 29364466 ~ 29366481 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1802998 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2519094 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2562173 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2976260 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 3003665 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 203697 29306021 ~ 29339847 (-)
G8701 NA other upstream 486984 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1473548 30575872 ~ 30744878 (-)
G8975 NA other upstream 1869064 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2832313 31934637 ~ 32006542 (-)

Expression


Co-expression Network