LOC120562537


Basic Information

Item Value
gene id LOC120562537
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22660479 ~ 22667885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100065
GGGGGTGTTGAAAAGTGGAGTGAGTCTTGAGGAGGGTAGCAGAAGAAGCAAAGGCTAAGCCTGGACATGCACATAGTTATTTACTCCTGTGAGGGTCAAGGAGCACAGGAACAACATTTGGAGAGTcttctgttgttgtttcttcttGTTCTCTCTGATTTGTTCTATAGCTTTTGGGGATTGTCTGGTTGTGGTGGAGGCCATCTGGCTGGAGCTTTATCAGGATTTTATGCTGTGAGCCTTTGACCAACTGTTACCACCTGCATGGGTCTCAGCCTGAGTTATTGCCGCCAAAGGACATAAGATTGTGCGTGTCCTGAGTTCGTCCTGTCAGAGCAACACAACATGAGCGGAGGAGAAAACCTTTATATATTCACCAAACGTCTGTCCAAGAAGTAGTAGTGTGGTCATTCCCTCCTGTCCTGAGAGCTCTGGTGCATCATGGAGTCTGTGATGAGAGTAAAAAAGACGCTGAGGACGCCCATCAGAAAGCTGACCAGCTGTGTGTCGGGGGTGAAGGAGAGGGAGTTGTGTGCCAAACGCAGGAAGAGGAGGGGCAGAgatgggagaggaagaggaggatgcaACAGGTTGGGGAGGACCCCTCCTCTCCGAACATCACACCCCAAAGACCCGTCAATCATCTGCTCGTACCAGGCGGACCTGGAGAAGGAGAGAGCCCCAAGGACACAAACCACCTGAGGTCTGTTGGCGGGAAAGTGTCGCTTCCCTACGAGCTGTCCAAGATCATGCATCCTGAAACCAAAACCAAGGACGATGGCTTCAACCTGCTGAGCGCCTTTCAAGGCCTCAGCTTCGGCACAGCGGCGCTCACAGGGAGGACACACAGCAAGACGTCCACTCCCACACCAGCAACTTGTAAAGTAATGTGATCAATATGTGATCACAGGGATGATCGGTACATGTGTTAGTGCAGGGGAACCACAGGGGACCCTCATACATGATTGctgctcacacacaaacagtgctTCAACCTCTTACAAACTCAGTCCAATCATCTCTGTTACACAAACATGTCATTCAGACTTTGCTTTTGTacttattttttgtcttttatgttGAAATAATAATATGCCAGATAATTTTATATCTTATAGTCTTTGAGATAAgctgaatatgaatatgaataatGTATTAATTAGTTCATGATTTTATGTATTATACAATATAGAAGCTACTAGATTATTATGACTAGCTAGTTTATAGATCCAAATAAGTGATCTATACACAAGTAAGGAACCTCAGGGAAACACGTTCAAATTTATCACACATTCACAGTATGTAATTCAAGTAAT
>XM_039806263.1
TCCTGTCCTGAGAGCTCTGGTGCATCATGGAGTCTGTGATGAGAGTAAAAAAGACGCTGAGGACGCCCATCAGAAAGCTGACCAGCTGTGTGTCGGGGGTGAAGGAGAGGGAGTTGTGTGCCAAACGCAGGAAGAGGAGGGGCAGAgatgggagaggaagaggaggatgcaACAGGTTGGGGAGGACCCCTCCTCTCCGAACATCACACCCCAAAGACCCGTCAATCATCTGCTCGTACCAGGCGGACCTGGAGAAGGAGAGAAAGCTCCGAGAAGCAATGAACACTCAGAAGAATGCGGAGAGAGCAGCTATGAGAGCTCACTTCAGGAGTAAATATGAGCTGTCTgagAGCCCCAAGGACACAAACCACCTGAGGTCTGTTGGCGGGAAAGTGTCGCTTCCCTACGAGCTGTCCAAGATCATGCATCCTGAAACCAAAACCAAGGACGATGGCTTCAACCTGCTGAGCGCCTTTCAAGGCCTCAGCTTCGGCACAGCGGCGCTCACAGGGAGGACACACAGCAAGACGTCCACTCCCACACCAGCAACTTGTAAAGTAATGTGATCAATATGTGATCACAGGGATGATCGGTACATGTGTTAGTGCAGGGGAACCACAGGGGACCCTCATACATGATTGctgctcacacacaaacagtgctTCAACCTCTTACAAACTCAGTCCAATCATCTCTGTTACACAAACATGTCATTCAGACTTTGCTTTTGTacttattttttgtcttttatgttGAAATAATAATATGCCAGATAATTTTATATCTTATAGTCTTTGAGATAAgctgaatatgaatatgaataatGTATTAATTAGTTCATGATTTTATGTATTATACAATATAGAAGCTACTAGATTATTATGACTAGCTAGTTTATAGATCCAAATAAGTGATCTATACACAAGTAAGGAACCTCAGGGAAACACGTTCAAATTTATCACACATTCACAGTATGTAATTCAAGTAATGACATTACTAATTTTGTACTTCAAATTGTTTTACTgtctttttataaataatcttTCCATATAtaaactgtatgtatgtatgtatgtaatgtatgtgaGCAAAGTTTTAAGTTATTAGTTTATTGATTAGTTTGCATTGAGGTGATAGTGGTGTGTAAATAGTCTTACACTTTCCTAATCAAGGTTTTTTATAAAGCAGAGACCAATAACTCACCAATAAAACCTTGTAGAGTTACCTACAAATGGATAAGTCATGGTCCTTTTAATTTTGGTTTATTAGCTGTGTGTGAAAAACTTTAATACAAAAACTGTTAAACtaactaataaaaacattttgaccA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU100065 False 1316 TUCP 0.46 3 22660479 22667544
XM_039806263.1 True 1330 mRNA 0.41 3 22661142 22667885

Neighbor

gene id symbol gene type direction distance location
clk2b LOC104944907,LOC101465036,LOC102211389,LOC100710865,LOC102298503,LOC102787711 coding upstream 3381 22651638 ~ 22657098 (+)
LOC120561656 NA coding upstream 9092 22643346 ~ 22651387 (+)
setdb1b setdb1 coding upstream 17401 22629617 ~ 22643078 (+)
LOC120561960 NA coding upstream 32947 22627347 ~ 22627532 (+)
cers2b cers2,LOC108241136,LOC102789054,LOC101467232,LOC102212238 coding upstream 53551 22589127 ~ 22606928 (+)
LOC120562535 LOC103478110,LOC102236274,LOC103136813,LOC106922010,LOC106957061,LOC107088793 coding downstream 31 22667916 ~ 22674134 (+)
pklr LOC100711399,LOC101487503,LOC102296262,LOC108235536 coding downstream 6392 22674277 ~ 22687960 (+)
zbtb7b LOC104949237,LOC102209066,LOC102295659,LOC100711944 coding downstream 42254 22710139 ~ 22732441 (+)
LOC120562542 LOC100712213,LOC102785254,LOC101485676,LOC102294439 coding downstream 65442 22733327 ~ 22740710 (+)
kcnj14 kcnj14,LOC104949235,LOC102784483 coding downstream 99242 22767127 ~ 22784419 (+)
G74769 NA non-coding upstream 405001 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 414716 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 417446 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 476442 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 530565 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 250867 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 256707 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 315007 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 326535 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 348922 23016807 ~ 23018595 (+)
arnt NA other upstream 34526 22610018 ~ 22625953 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other upstream 74907 22559944 ~ 22585572 (+)
rprd2b NA other upstream 170535 22469978 ~ 22489944 (+)
rusc1 LOC104958857 other upstream 347959 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other upstream 372185 22279556 ~ 22288294 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 21185 22689070 ~ 22705416 (+)
myh14 NA other downstream 117693 22785578 ~ 22820053 (+)
cnot3a cnot3 other downstream 232204 22900089 ~ 22911520 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 402702 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 823240 23491125 ~ 23494034 (+)

Expression


Co-expression Network