G75196 (u2af2)


Basic Information

Item Value
gene id G75196
gene name u2af2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23339846 ~ 23342677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100578
GGGGATGTGGGCGCGCATAAGAGAGGaaacaaagaagaaagacatcatgtaaattcagtttttaatcaacatttgaaaacaaattgGACAAATGAAAgactgtttttgctttttataaACTAGatgtttttagctttttttaatcatttaagaAATCACGTATTttttccagattttttttttttaaatgaccgaCACTGAGAAAGATTTCAGAAAGTAAGGAGTAACATCTCATAAGTGTTATCACTGACACAAACGCTTTTCAGCGCCATCTTAATCAACCCAACAGAAAGCAGCCTCAAGCCCGTACACGTGGTCCTCAGAGAATCAAGGGCAGAAGATGAGGGAGATGAGAGAAAAGCAGACTTTATCAAAGTACATACAGACTGTTTTTAACATCCAAACAACTACATTTTAGTGAAAATCCTCCAACAGTAACATAATAAAATCATGAAAGCTAAACACTAAAACGTGAAATGATTTATCTTTGAAATTTAGTTGGTGTATCATAGCAAGTGTTTGTCTGCAGGCTTTAATTTATTAATCTCTAGAGAGCCCAACTAAAATCAAGCCATTGCAGTATTAGTTTTAAGTCTTTAGTGTGGCTTATCAGTGTACCTAGTTTGTCTTTTTGAACAAATCAGGCTTGAAGTTGACAGAACAGAAAGAAGTTGTGTGGTTTTGGTTTCACTCTGTGGTACAACATGAGTCGTGGGTATTAGTCACGTGTTTATTTGGTCTTGTCAGAGGTGAGACGTTGCAAACACAACCCGGTCCAACACATATTACACCCCAAATCTGATGGGAAACAAGGAAAAATTAAAACTAGTGATGCAAGGCTGAAGGACAAGATAGTGACATCTATTAACATACAGACATCATTAATAGAGGGGCAAGCCAAATTTATTATAGCGAATAGACATGTAATAACATTAAGGCTTTTTGGTAAGGAAGAGATAAATCCCCTATTAAACACCAATCTGTTTGCCTCTGCCCAccttattttcttttacttcctCTAGAATTAAATCTGGACTGAACTGCTAAGACGAAACAACCTCACCTGTTAAAAGCTGTGCACAAAAGATGGACGTGAAAAAAGTTACagaaaataggaaaaaaaagaaacttaaaCTGGCATAATTGAAAACTCTTTTCTGGAGCTCATGTTATTCTGCGGCCTGAATACAAGGTAATATACCAGCTCAAATCAGTGAAGCTACACACAGTATTGAAACAATTACAGTTGACATTCAGATAGAGTCCAATTAGACAACATATTCTCTAACAATCGTCCTGAGGGGGGTAGCAGTCTGATGAAAATGAAGGAACATGAAGAAATGAGTCCaagctgaaaaaaataaaaaacatgaggAGTCTCCTCTCACCTTTCTAATGATGGTGGCAAAACGGAAGTGGACATTACAGCTACTGTATATCTAGATTAGATGGTCAAACAAAAATGCCTTCAtcttcctctccatctcccCCACATCTCCCTCTCACAAATAAACACTCCTGTTTTCTCCATCCCTCTTCTCCATCAGAATAGTCCAGTTAGTTCCCTACTGCAACTCCTTTCTAATGTACTTAAAACAGGCTACCTCCATTTAAATACAAACCTTAAAGAATGGGACCCCCCTCCCACCCAAAATGACATCCCTGTCTCACAAAGTATAAAAATTGTTGACCCCACCCCAGACCTATTATTACACACATTTCTCAAAAATCTTTGACTGAATATAAACCCTCCCAATTCTTCTCCTTTTCCAATTCCAAATATCTGTTTAAACTGCTGGACATTTCACGTAGATCTCAAATGATGAATTTGATACTGCCAAAGCCATTTGTCAAATGATTAATACGCTTGGATCTACCTGAAATGTTGCTTTGCGAAATCGGGGGGCTGATTTAGAAACGGGTAATACATgttccctccctctttccctccctttgCCCACCCCCTCTTCTCTTCACGCCTCCTCTACCAGAAGTCTCGGCGGTGATACGCGTCTGGATCGCAGTATTTGGTCACCACCACCCTGTTGGCAAACTTCCTTCCGGTCAGCCCCTGCATGGCCTTCTGGGAGTCAAAAACAGACATGAACTCCACAAAGATCTTGCCGGTCCCAGGCACCTCGAGGCCGTCCACAGGTCGAGGTATCTCGATGCTCTTCACTTGGCCGTACTTGCTGCACTCGTCCCTGACGTCCTCCACAATCTCCTCATATTCTTCATCATCCAGCAGCTCCTCTGGGGCCACCATGTTCATCAGACACAGAACCTCAGTGGGCAGCCCACCCATTTGAGTCACTGAGCTGTTCAGACCCGGCACCTGCAGCGTCACTGGGGTCTGATTTATACTTGTCTGCAAGGCCAGACAGAAAGGTTAGAACAGGGTCAATGGCATATTTTACAT
>TU100579
GGAAAATGTACTCACCCATATTATGTTGCAGTACAAGAAGTAATATTTAGATGACATattacaatgaaaaaaaaactgactgtaAAATTGCTCCATAGTTCAGACATTACATTCACTACAGGGCTTGATAAGTTATGCCATCAACTGAATGAAACAGCCTGGACATGGGTGCAGTCTGCTCCATCTACATAATTAACTGTGAATGTCATCACTCGCTGGTTGAGTCAAAGTGTGCAGAAAGCAGCCTCAAGCCCGTACACGTGGTCCTCAGAGAATCAAGGGCAGAAGATGAGGGAGATGAGAGAAAAGCAGACTTTATCAAAGTACATACAGACTGTTTTTAACATCCAAACAACTACATTTTAGTGAAAATCCTCCAACAGTAACATAATAAAATCATGAAAGCTAAACACTAAAACGTGAAATGATTTATCTTTGAAATTTAGTTGGTGTATCATAGCAAGTGTTTGTCTGCAGGCTTTAATTTATTAATCTCTAGAGAGCCCAACTAAAATCAAGCCATTGCAGTATTAGTTTTAAGTCTTTAGTGTGGCTTATCAGTGTACCTAGTTTGTCTTTTTGAACAAATCAGGCTTGAAGTTGACAGAACAGAAAGAAGTTGTGTGGTTTTGGTTTCACTCTGTGGTACAACATGAGTCGTGGGTATTAGTCACGTGTTTATTTGGTCTTGTCAGAGGTGAGACGTTGCAAACACAACCCGGTCCAACACATATTACACCCCAAATCTGATGGGAAACAAGGAAAAATTAAAACTAGTGATGCAAGGCTGAAGGACAAGATAGTGACATCTATTAACATACAGACATCATTAATAGAGGGGCAAGCCAAATTTATTATAGCGAATAGACATGTAATAACATTAAGGCTTTTTGGTAAGGAAGAGATAAATCCCCTATTAAACACCAATCTGTTTGCCTCTGCCCAccttattttcttttacttcctCTAGAATTAAATCTGGACTGAACTGCTAAGACGAAACAACCTCACCTGTTAAAAGCTGTGCACAAAAGATGGACGTGAAAAAAGTTACagaaaataggaaaaaaaagaaacttaaaCTGGCATAATTGAAAACTCTTTTCTGGAGCTCATGTTATTCTGCGGCCTGAATACAAGGTAATATACCAGCTCAAATCAGTGAAGCTACACACAGTATTGAAACAATTACAGTTGACATTCAGATAGAGTCCAATTAGACAACATATTCTCTAACAATCGTCCTGAGGGGGGTAGCAGTCTGATGAAAATGAAGGAACATGAAGAAATGAGTCCaagctgaaaaaaataaaaaacatgaggAGTCTCCTCTCACCTTTCTAATGATGGTGGCAAAACGGAAGTGGACATTACAGCTACTGTATATCTAGATTAGATGGTCAAACAAAAATGCCTTCAtcttcctctccatctcccCCACATCTCCCTCTCACAAATAAACACTCCTGTTTTCTCCATCCCTCTTCTCCATCAGAATAGTCCAGTTAGTTCCCTACTGCAACTCCTTTCTAATGTACTTAAAACAGGCTACCTCCATTTAAATACAAACCTTAAAGAATGGGACCCCCCTCCCACCCAAAATGACATCCCTGTCTCACAAAGTATAAAAATTGTTGACCCCACCCCAGACCTATTATTACACACATTTCTCAAAAATCTTTGACTGAATATAAACCCTCCCAATTCTTCTCCTTTTCCAATTCCAAATATCTGTTTAAACTGCTGGACATTTCACGTAGATCTCAAATGATGAATTTGATACTGCCAAAGCCATTTGTCAAATGATTAATACGCTTGGATCTACCTGAAATGTTGCTTTGCGAAATCGGGGGGCTGATTTAGAAACGGGTAATACATgttccctccctctttccctccctttgCCCACCCCCTCTTCTCTTCACGCCTCCTCTACCAGAAGTCTCGGCGGTGATACGCGTCTGGATCGCAGTATTTGGTCACCACCACCCTGTTGGCAAACTTCCTTCCGGTCAGCCCCTGCATGGCCTTCTGGGAGTCAAAAACAGACATGAACTCCACAAAGATCTTGCCGGTCCCAGGCACCTCGAGGCCGTCCACAGGTCGAGGTATCTCGATGCTCTTCACTTGGCCGTACTTGCTGCACTCGTCCCTGACGTCCTCCACAATCTCCTCATATTCTTCATCATCCAGCAGCTCCTCTGGGGCCACCATGTTCATCAGACACAGAACCTCAGTGGGCAGCCCACCCATTTGAGTCACTGAGCTGTTCAGACCCGGCACCTGCAGCGTCACTGGGGTCTGATTTATACTTGTCTGCAAGGCCAGACAGAAAGGTTAGAACAGGGTCAATGGCATATTTTACAT

Function

symbol description
u2af2 Enables enzyme binding activity and pre-mRNA 3'-splice site binding activity. Involved in mRNA splicing, via spliceosome; negative regulation of protein ubiquitination; and regulation of RNA splicing. Located in nuclear speck. Part of U2-type prespliceosome and U2AF complex. Colocalizes with Prp19 complex.

NR:

description
PREDICTED: splicing factor U2AF 65 kDa subunit isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100578 True 2419 lncRNA 0.41 3 23340092 23342677
TU100579 False 2367 lncRNA 0.41 4 23339846 23342677

Neighbor

gene id symbol gene type direction distance location
cacng8b cacng8,LOC104960431,LOC105934996,LOC106536814 coding upstream 17085 23304312 ~ 23322761 (+)
cacng7b LOC103478058,LOC106931042,LOC107100306,LOC102228764,LOC105934928,LOC102193840 coding upstream 37821 23289137 ~ 23302025 (+)
prkcg LOC100699493,LOC102194125,LOC102306909,LOC102782677,LOC101481445,LOC101164921 coding upstream 52894 23269123 ~ 23286952 (+)
LOC120562649 LOC102193556,LOC102782376,LOC102306605,LOC101481152,LOC103478060,LOC108235494 coding upstream 83182 23205948 ~ 23256664 (+)
si:dkeyp-69b9.3 LOC104960480 coding upstream 198094 23129094 ~ 23141752 (+)
rcvrn2 LOC104929791,LOC103367647,LOC104960422 coding downstream 35928 23378605 ~ 23382673 (+)
isoc2 isoc2 coding downstream 50322 23392999 ~ 23395671 (+)
foxj2 NA coding downstream 53257 23395934 ~ 23401710 (+)
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding downstream 77670 23420347 ~ 23426645 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding downstream 90972 23433649 ~ 23437044 (+)
LOC120561704 NA non-coding upstream 7090 23331840 ~ 23332756 (+)
G75192 NA non-coding upstream 11217 23328242 ~ 23328629 (+)
G75155 NA non-coding upstream 195681 23143942 ~ 23144165 (+)
G75077 LOC104960445 non-coding upstream 321251 23016807 ~ 23018595 (+)
G75069 NA non-coding upstream 345140 22994420 ~ 22994706 (+)
G75197 NA non-coding downstream 4163 23346840 ~ 23350767 (+)
G75199 LOC103372680 non-coding downstream 8468 23351145 ~ 23354175 (+)
G75227 NA non-coding downstream 94419 23437096 ~ 23441226 (+)
G75301 NA non-coding downstream 151536 23494213 ~ 23494477 (+)
LOC120561968 NA non-coding downstream 288739 23631416 ~ 23633834 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 256699 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 428326 22900089 ~ 22911520 (+)
myh14 NA other upstream 519793 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 634430 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 671961 22660479 ~ 22667885 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 148448 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 218171 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 298878 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 425556 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 531232 23873909 ~ 23879415 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location