LOC120562612 (LOC103367657,LOC105025867,LOC103136704)


Basic Information

Item Value
gene id LOC120562612
gene name LOC103367657,LOC105025867,LOC103136704
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23491125 ~ 23494034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100710
ttttttttttttttcccctttttttttttttttttttttttttttcttgctgggGGGGTGGGCTCATAAAGATGTCTGACACTTTTGATGAGAAGATCAAGAACTACAGGACGGCTCCTTTTGACGCCCGATTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTACCTGGACTTCCACAGGTGCAACAAGGCCCTGTCAGCCAAAGACCAGGATGTGGCTCCCTGTGATTGGTACCAGAGGGTTTACAAGAGCCTCTGTCCCATGAGCTGGGTCGGCAAATGGGACGAGCAGATAGAGAATGGAAGTTTCCCGGGAAAGATCTAAAATCGGCAGCCGTTATTGATCAGGACAGTTCACTGCTAGACATGCTGTTGCACCTTTACCTCTGTAGTGTGCCTCATGACATCTTCAAAACAGCTAACAAACCATCATCAATAATATTAACTGTTATTAACTTTAAATATAAACACGCACAACTTTTTACCTTGCATGTTAAGGTCTGAAGTTTTTTCTCCATCTATTGTAAAGTACTCTTCGGCTTTGTTTGATCAATAAATACTGTGCGGATTT
>XM_039806414.1
AAAGATGTCTGACACTTTTGATGAGAAGATCAAGAACTACAGGACGGCTCCTTTTGACGCCCGATTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTACCTGGACTTCCACAGGTGCAACAAGGCCCTGTCAGCCAAAGACCAGGATGTGGCTCCCTGTGATTGGTACCAGAGGGTTTACAAGAGCCTCTGTCCCATGAGCTGGGTCGGCAAATGGGACGAGCAGATAGAGAATGGAAGTTTCCCGGGAAAGATCTAAAATCGGCAGCCGTTATTGATCAGGACAGTTCACTGCTAGACATGCTGTTGCACCTTTACCTCTGTAGTGTGCCTCATGACATCTTCAAAACAGCTAACAAACCATCATCAATAATATTAACTGTTATTAACTTTAAATATAAACACGCACAACTTTTTACCTTGCATGTTAAGGTCTGAAGTTTTTTCTCCATCTATTGTAAAGTACTCTTCGGCTTTGTTTGATCAATAAATACTGTGCGGATTTAATTAAAAGGG

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100710 True 578 TUCP 0.42 3 23491125 23494023
XM_039806414.1 False 522 mRNA 0.44 3 23491192 23494034

Neighbor

gene id symbol gene type direction distance location
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding upstream 54081 23433649 ~ 23437044 (+)
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding upstream 64480 23420347 ~ 23426645 (+)
foxj2 NA coding upstream 89415 23395934 ~ 23401710 (+)
isoc2 isoc2 coding upstream 95454 23392999 ~ 23395671 (+)
rcvrn2 LOC104929791,LOC103367647,LOC104960422 coding upstream 108452 23378605 ~ 23382673 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding downstream 4755 23498789 ~ 23508665 (+)
ephb6 ephb6,LOC102800023,LOC104960407 coding downstream 18521 23512555 ~ 23556483 (+)
m6pr NA coding downstream 99827 23593861 ~ 23600002 (+)
phc1 phc1 coding downstream 107068 23601102 ~ 23608496 (+)
clcn1b clcn1,LOC102795222 coding downstream 158534 23652568 ~ 23684905 (+)
G75227 NA non-coding upstream 49899 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 136950 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 140358 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 148448 23339846 ~ 23342677 (+)
LOC120561704 NA non-coding upstream 158369 23331840 ~ 23332756 (+)
G75301 NA non-coding downstream 179 23494213 ~ 23494477 (+)
LOC120561968 NA non-coding downstream 137382 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 389143 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 449459 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 478293 23972327 ~ 23975734 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 407978 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 579605 22900089 ~ 22911520 (+)
myh14 NA other upstream 671072 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 785709 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 823240 22660479 ~ 22667885 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 66814 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 147521 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 274199 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 379875 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 532881 24026915 ~ 24039427 (+)

Expression


Co-expression Network