trpv6 (LOC104929027,LOC104960406,LOC103388006,LOC107082237)


Basic Information

Item Value
gene id trpv6
gene name LOC104929027,LOC104960406,LOC103388006,LOC107082237
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23560848 ~ 23571243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100720
tatgtatttgtatgaatttttttaatatcagaATAAAACCTTGTTGAAACAAACTTACTGGCCCTCATTTGTGGAAAAAGTCAAACAGCAGTTTATAGAATCATAAGAGTAAAGTACCCTAAATAGTGCTTATAAGCTTAACTGACATGTTAGAATACAAATAAGTCAACACAATGCTACacaaaaatataatgtatacaataaAATCTGACTAATAATTTCATTCAAGTGTTACACATAAAACTATAATCTAAAAAGCTTCATTGTCTTTCTTTGCTGGATATTACGGATTGAAGTGTGAAGTGGAAAGAGACAtgattataaatgttatggaggATTTGATGCTTGTTGACAGAGATTGGTTTGCTCATTTTTCTGTTAAAAAGGAGACAGAAGTTGTCAGAGCTGCACCTGACAGATGAAGTAGGTGTAGTCTTTGCAGGAAGCTTTGATCCAGTTCTCATTGCTGAGGATCCCACAATCCCCCTCTAATGGGTTGTCTGCCCAATAACTCTCGCAGCACAGTGTTGTTGACCCAGGTCCATGTGGCTCCTTTGTGTCTCAGTCCGATCCAGTATTGCATTTTCCCTTGCTTTGCCAGAAAACTCTGAACTCTCTGGCTGGTAACAACAGCCAGATCTCCTCCTTTGGCGATGCAGATCTTCTGGCTCTCGTCCCAGCTCCGCCTGAAGGTGGACAGGAAAAAACACGACCGGTCTAAAGTCAGCCACCCATCAGCGCACTGCTGACAGCCGCGATTTGAGGTTGAATGCTGGGGAAGAGAGCCTGGCACTCCTCGTGGCTGCATGTTGGAGCAAATGGAGGACTTTGTCTGTCTATTCCTGTAGCTTCCGCTCTCTCTGGGCAGACTGTGGAGCCAGTTTGGAGTTTCACACTGAGGATAATGACGACCAGCAGTAGGACCAGGCAGATTATGGTGAGGAACAAACATGCAGCACGGTACAGACGTGTGTTTCCTTCAGCCTGTTTGCCTTTCCCCCCTCCAGTTCAACAGATAACTTGGACTCGGGTGACAAGTTTTCACTGGCATCATCTTTTTTGTTCTCTCCATAACTGCGCCAGAATTTGATGTACATGGCGAAAAGGGTCCTGGGATTTGTGATGCAGCTTGTTTACCCTGTCCTGCTCGGTCTGCCTGTCCTGCT
>TU100722
tatgtatttgtatgaatttttttaatatcagaATAAAACCTTGTTGAAACAAACTTACTGGCCCTCATTTGTGGAAAAAGTCAAACAGCAGTTTATAGAATCATAAGAGTAAAGTACCCTAAATAGTGCTTATAAGCTTAACTGACATGTTAGAATACAAATAAGTCAACACAATGCTACacaaaaatataatgtatacaataaAATCTGACTAATAATTTCATTCAAGTGTTACACATAAAACTATAATCTAAAAAGCTTCATTGTCTTTCTTTGCTGGATATTACGGATTGAAGTGTGAAGTGGAAAGAGACAtgattataaatgttatggaggATTTGATGCTTGTTGACAGAGATTGGTTTGCTCATTTTTCTGTTAAAAAGGAGACAGAAGTTGTCAGAGCTGCACCTGACAGATGAAGTAGGTGTAGTCTTTGCAGGAAGCTTTGATCCAGTTCTCATTGCTGAGGATCCCACAATCCCCCTCTAATGGGTTGTCTGCCCAATACTCTCTCGCAGCACAGTGTTGTTGACCCAGGTCCATGTGGCTCCTTTGTGTCTCAGTCCGATCCAGTATTGCATTTTCCCTTGCTTTGCCAGAAAACTCTGAACTCTCTGGCTGGTAACAACAGCCAGATCTCCTCCTTTGGCGATGCAGATCTTCTGGCTCTCGTCCCAGCTCCGCCTGAAGGTGGACAGGAAAAAACACGACCGGTCTAAAGTCAGCCACCCATCAGCGCACTGCTGACAGCCGCGATCTGCAAGGAGAGACGGATCAGGGCAGAAAACAAAAGGTCACTCAAATGTGGACTAAAG
>XM_039805778.1
CATGTACCAGAGATGTCTGTAATAATTGTTTGCTGTGGTGTCCTGACTCAAATTAACAAAGTGTTGTGAAAGAACTGCTGGTACGTATGTCCAAAAACAGTAGACATGCAAACCAcaaaatcatgtttttatgGTGTTATTGTTTCTTTATAAAGACATTCACAGAGTGGAAACCACCGGTCTTTAAGACACTACTTAAAGATGGTGCTCTCCGTCTGGTAAACAGCTATTATCTTCACAATACTAAATGACGGCCACATCGGCAACCATTATCAGGGCCTCCTATAGAGTCTTCCTGAACCCTGTTTATCCTGTGGTTGACCACCATTTATTAGTCATGACCCATAAATAGTGCAGCAAAATACCTGCAACGCTACATCAGATAACCAGAGATGTTGTAAAAGTTGACTGATTCAGCAGTTTACAAATAATTGTGTGGAAATGAAATCTGGTTCAGtcggatgattttttttttttttgccaaatgaaCTCTCCTGGAATAAAGACTGATCATTTCACAAAATTAAATGTAGCATATAGCtttgttttctgcattgagaGGTAAAGTGACATGATGTTTCTAGCCTCCAAATTATCATTATGGTCTTTGTAATGTGGCAATTACCGTGTTTGTGATCATTCCTGTTGACACATCAATGGTGCTTAACATGTTAAATCATTGTGAATGAAACTAGTTTGTGTTTGTACAAGATGTTGGAAAATCAGACTTAATGTCCATAAATTACTCCACCAAACAATTCCAGTTTCACCTGGAGAAATCGGCCCACTAATAGAACTAAAAGAAATGCAGCCTGGACAATTGTGCCGAGGCGTTAATATtaagtttaaattaaaaaccTGCGTTCAGACAAACAAACTTTCTATTTCCAAACAGGTTTCCTTTAATGGTTCACTAGAAACAATGACAGCAAAGTGTTTATTGTCATGATGTTGCCAAATTGTCATAGTGGCCATGCAGGTTTTGGTGGTAGTTGGTGGAATGCAGATAGGCCTGGTGATAACAGTGAGATATACTGGGATTAGGTACTAGACCATTGTCACTTCACTTTTAAGGTGACAGAATACAGCCGGTAATTTCACATCGGCATGATAAAGTGAGTTGAACCTTAAAGTGCAACTTTCCCTGTGGGATTGCTGACCTGCGGTGAAAGTCTACCTGCTCATTACCGACTCACTCTCGCTGTCTTACCTGTCCACTGTTCACTCATCCTCCCTCTCCCATTCATTCTCAAGCCCTCCACATGTCTCCTCCCTCTTTGCTGAGGTCATATATAACCCAGCAAGGGTTTTCACTTCTCCTCAGGGACATTTTACAGGTGTTGTCTCCAACTTTGACAGAGTGTTATGACCGAGGATTTCAAGAAGTTGTGGAGCAGCACTTGTATTGTTTAAGGGTGAGATTGAGACAcattcttatttttttgttcatttgttttattgtactttattttgaaaactgtATAAAATAGTTCATGTTAAGGCCTTTATGAAGCCTGTCTGATTGTACACTTTGTTCCAttggtatgttttttttaattcactgCTTCTCACTCTTTCATTTGTCTCTTCCAGTCAAACATCAGGTGTCAATGTCTCCGTCTCTGGCCAGATCTGCTCCGAGCGAGCTCAACCATTggtggagccagctgaggtTTCGTCTTCAAAACAAGAAAGGATGGAACGAGATGTTGGATGAGACGTTTCTGCTCCACACAAAATACATAAATGACATTCCTCTCTTCTATGAGGCTAAAATGAACAGTGTCGGCTCCATCAAGAAACTGCTGAGTTGTGCGTCCACTAATATCTTTGAGAGAGGGGCTCTTGGTGAGACGGCACTTCATGTTGCTGTGATGGCTGATAACCTGGAAGCTGCCATGGCTCTGATGGACGGAGCTCCTGAACTCATCAACGAGCCTATGACATCCGAGCTCTTCCAAGGTGTTACTCCTCTCCACATCGCTGTGGTGAATCAGAACATCAATCTGGTTCATCATCTGATCAGTCGTGGGGGTGACGTGGCTACACCTCGAGTCACCGGTCTGTACTTCAAGAAGAGGATAGGAGGACTCATATACTGTGGTGAGCACATCCTGTCTTTTGCTGCGTGTGCTGGGAACGAGGACATTATCTCCATGGTGATCGACGCAGGGGCCAGCACCAGAGGCCAGGATTACCGTGGTAACACAGCGCTTCACATTTTGGTTCTGCAGCCCAACAAGACTATTGCGTGCCAGGCCATTGACCTGATTATGGCACGCGATGCAGAGCTGGACCAGTCAGTGCCACTCGACATGGTGCCCAACAACCGAGGCCTTACGCCTTTTAAACTGGCTGCCAAAGAGGGAAACATTGTGGCGTTTCAGCACCTGGTTAATAAAAGGCGTGTAGTCCAATGGAGTCTGGGCCCCCTGACCTCTAACCTGTATGACCTGACGGAAATAGATTCATGGGCTGACGACATGTCAGTGCTGGAGCTCATCGTGGGCGGTCACAAGAGAGAGGCAAGAAGGATACTGGAGTTGACTCCTGTGAggcagctggtcagtctgaagTGGAACCTGTATGGAAAACATTACTTCAGGCTGCTGCTGTTCCTGTATCTCCTGTACATCGGGACCTTCACACTGTGTTGTGCATTTCGCCCTCTGAAGGACGCTCCGGAGAACTACACACAGTCAGAAATGGACAAAACCATCCGGGTCCAGAAAACATTTCATGAGAGTTATGTGACACATGAGGACAACCTGCGGCTGGTGGGTGAGATCATCAGCATCCTGGGAGCTTTTGTCATCCTGTTGCTAGAGATCCCTGACATACTGAGAGTGGGGGCAAAGCGCTATTTTGGCCAGACAGCACTGGGAGGCCCCTTCCATGTTATCCTTATCACCTACGCATGCCTGgtggtgctgctgtgtgtgttcagagccTGCGAGGTGCAGGGAGAGGCTGTGGTGATGGCAGTGTGTTTAGTTCTCGGGTGGAGCAATGTCATGTTCTTCGCCCGAGGTTTTGAAATGCTCGGCCCTTATGTCATCATGATACAGAAGATTATATTTGGAGACCTGACCAAGTTCATGTGGCTGAGTTTCATTGTGCTCATTGGTTTTTCCACCTcccTGTGGGTGGTGTATATGACCCAGGAGCCTGAGTCCATTCCTGCATATCGCTCCTTTCCCATCACCCTCTTCTCCCAGTTTGAGCTCAGCGTGGGCCTCATAGATCTGCCTGTGGACCAAACCATCACTACCCACCCGATCGTCTACGTGCTGCACTGCACCTTCTCTGTTGTCTCCTACATCCTTCTTCTAAATCTACTGATAGCTATGATGAGTGACACACACTGGAGGGTGGCCCAGGAGAGAGATGAGCTCTGGAGGACTCAGGTGGTAGCCACAACGCTGATGCTGGAGAGGCGGCTGCCCCGCTACCTGTGGCCTCGGCTCGGGGTGTGTGGGCTCAAATACGGTCTGAAGGAGCGCTGGTATCTCAGGGTTGAGGACAGAAACGACCCAATGTTGCAAAAGATGCGGCGTTACGCCAAGGCTTTCTCTAAAGAcgaggaaaaggaaaaggaggGATTGGAGAAGTCTGACACGATAAAGGGGTCCATCTCAGGAACCCCCAAGCTCAGACCTAAAAACAATGCGAGGTCTCTGACAGGGTGGCAGATGATTCGCCACAGCGCTTTGGGTTTGGAGATGGAGCAGGAAGAGCCAGAGGAGGACCAGGACATTAAATATGTTTAGGAAGAGATTCTGCCTGAGCCTGAAGAGCATTCTCTGAGCCCTTCCTTCATCTTACAGTCCTGAACATATAAAGTACACAAAGTGTTTATGAACATACTTGCAAGACGAGGACTCAACCGACCCAATCTGTCTATACATTCAACTGTGCAATTATTCCAGCAGTATTATGCTTTAGAAAAGagtgtgttatttttttatataaaatagtagtagtatagtataaaACTGTAGCAGTAATATTTGCTCAGCTAATATAAAGTGAAACAGACATTCAActtattatgtatttgtatgaatttttttaatatcagaATAAAACCTTGTTGAAACAAA
>XM_039805779.1
CATGTACCAGAGATGTCTGTAATAATTGTTTGCTGTGGTGTCCTGACTCAAATTAACAAAGTGTTGTGAAAGAACTGCTGGTACGTATGTCCAAAAACAGTAGACATGCAAACCAcaaaatcatgtttttatgGTGTTATTGTTTCTTTATAAAGACATTCACAGAGTGGAAACCACCGGTCTTTAAGACACTACTTAAAGATGGTGCTCTCCGTCTGGTAAACAGCTATTATCTTCACAATACTAAATGACGGCCACATCGGCAACCATTATCAGGGCCTCCTATAGAGTCTTCCTGAACCCTGTTTATCCTGTGGTTGACCACCATTTATTAGTCATGACCCATAAATAGTGCAGCAAAATACCTGCAACGCTACATCAGATAACCAGAGATGTTGTAAAAGTTGACTGATTCAGCAGTTTACAAATAATTGTGTGGAAATGAAATCTGGTTCAGtcggatgattttttttttttttgccaaatgaaCTCTCCTGGAATAAAGACTGATCATTTCACAAAATTAAATGTAGCATATAGCtttgttttctgcattgagaGGTAAAGTGACATGATGTTTCTAGCCTCCAAATTATCATTATGGTCTTTGTAATGTGGCAATTACCGTGTTTGTGATCATTCCTGTTGACACATCAATGGTGCTTAACATGTTAAATCATTGTGAATGAAACTAGTTTGTGTTTGTACAAGATGTTGGAAAATCAGACTTAATGTCCATAAATTACTCCACCAAACAATTCCAGTTTCACCTGGAGAAATCGGCCCACTAATAGAACTAAAAGAAATGCAGCCTGGACAATTGTGCCGAGGCGTTAATATtaagtttaaattaaaaaccTGCGTTCAGACAAACAAACTTTCTATTTCCAAACAGGTTTCCTTTAATGGTTCACTAGAAACAATGACAGCAAAGTGTTTATTGTCATGATGTTGCCAAATTGTCATAGTGGCCATGCAGGTTTTGGTGGTAGTTGGTGGAATGCAGATAGGCCTGGTGATAACAGTGAGATATACTGGGATTAGGTACTAGACCATTGTCACTTCACTTTTAAGGTGACAGAATACAGCCGGTAATTTCACATCGGCATGATAAAGTGAGTTGAACCTTAAAGTGCAACTTTCCCTGTGGGATTGCTGACCTGCGGTGAAAGTCTACCTGCTCATTACCGACTCACTCTCGCTGTCTTACCTGTCCACTGTTCACTCATCCTCCCTCTCCCATTCATTCTCAAGCCCTCCACATGTCTCCTCCCTCTTTGCTGAGGTCATATATAACCCAGCAAGGGTTTTCACTTCTCCTCAGGGACATTTTACAGGTGTTGTCTCCAACTTTGACAGAGTGTTATGACCGAGGATTTCAAGAAGTTGTGGAGCAGCACTTGTATTGTTTAAGGTCAAACATCAGGTGTCAATGTCTCCGTCTCTGGCCAGATCTGCTCCGAGCGAGCTCAACCATTggtggagccagctgaggtTTCGTCTTCAAAACAAGAAAGGATGGAACGAGATGTTGGATGAGACGTTTCTGCTCCACACAAAATACATAAATGACATTCCTCTCTTCTATGAGGCTAAAATGAACAGTGTCGGCTCCATCAAGAAACTGCTGAGTTGTGCGTCCACTAATATCTTTGAGAGAGGGGCTCTTGGTGAGACGGCACTTCATGTTGCTGTGATGGCTGATAACCTGGAAGCTGCCATGGCTCTGATGGACGGAGCTCCTGAACTCATCAACGAGCCTATGACATCCGAGCTCTTCCAAGGTGTTACTCCTCTCCACATCGCTGTGGTGAATCAGAACATCAATCTGGTTCATCATCTGATCAGTCGTGGGGGTGACGTGGCTACACCTCGAGTCACCGGTCTGTACTTCAAGAAGAGGATAGGAGGACTCATATACTGTGGTGAGCACATCCTGTCTTTTGCTGCGTGTGCTGGGAACGAGGACATTATCTCCATGGTGATCGACGCAGGGGCCAGCACCAGAGGCCAGGATTACCGTGGTAACACAGCGCTTCACATTTTGGTTCTGCAGCCCAACAAGACTATTGCGTGCCAGGCCATTGACCTGATTATGGCACGCGATGCAGAGCTGGACCAGTCAGTGCCACTCGACATGGTGCCCAACAACCGAGGCCTTACGCCTTTTAAACTGGCTGCCAAAGAGGGAAACATTGTGGCGTTTCAGCACCTGGTTAATAAAAGGCGTGTAGTCCAATGGAGTCTGGGCCCCCTGACCTCTAACCTGTATGACCTGACGGAAATAGATTCATGGGCTGACGACATGTCAGTGCTGGAGCTCATCGTGGGCGGTCACAAGAGAGAGGCAAGAAGGATACTGGAGTTGACTCCTGTGAggcagctggtcagtctgaagTGGAACCTGTATGGAAAACATTACTTCAGGCTGCTGCTGTTCCTGTATCTCCTGTACATCGGGACCTTCACACTGTGTTGTGCATTTCGCCCTCTGAAGGACGCTCCGGAGAACTACACACAGTCAGAAATGGACAAAACCATCCGGGTCCAGAAAACATTTCATGAGAGTTATGTGACACATGAGGACAACCTGCGGCTGGTGGGTGAGATCATCAGCATCCTGGGAGCTTTTGTCATCCTGTTGCTAGAGATCCCTGACATACTGAGAGTGGGGGCAAAGCGCTATTTTGGCCAGACAGCACTGGGAGGCCCCTTCCATGTTATCCTTATCACCTACGCATGCCTGgtggtgctgctgtgtgtgttcagagccTGCGAGGTGCAGGGAGAGGCTGTGGTGATGGCAGTGTGTTTAGTTCTCGGGTGGAGCAATGTCATGTTCTTCGCCCGAGGTTTTGAAATGCTCGGCCCTTATGTCATCATGATACAGAAGATTATATTTGGAGACCTGACCAAGTTCATGTGGCTGAGTTTCATTGTGCTCATTGGTTTTTCCACCTcccTGTGGGTGGTGTATATGACCCAGGAGCCTGAGTCCATTCCTGCATATCGCTCCTTTCCCATCACCCTCTTCTCCCAGTTTGAGCTCAGCGTGGGCCTCATAGATCTGCCTGTGGACCAAACCATCACTACCCACCCGATCGTCTACGTGCTGCACTGCACCTTCTCTGTTGTCTCCTACATCCTTCTTCTAAATCTACTGATAGCTATGATGAGTGACACACACTGGAGGGTGGCCCAGGAGAGAGATGAGCTCTGGAGGACTCAGGTGGTAGCCACAACGCTGATGCTGGAGAGGCGGCTGCCCCGCTACCTGTGGCCTCGGCTCGGGGTGTGTGGGCTCAAATACGGTCTGAAGGAGCGCTGGTATCTCAGGGTTGAGGACAGAAACGACCCAATGTTGCAAAAGATGCGGCGTTACGCCAAGGCTTTCTCTAAAGAcgaggaaaaggaaaaggaggGATTGGAGAAGTCTGACACGATAAAGGGGTCCATCTCAGGAACCCCCAAGCTCAGACCTAAAAACAATGCGAGGTCTCTGACAGGGTGGCAGATGATTCGCCACAGCGCTTTGGGTTTGGAGATGGAGCAGGAAGAGCCAGAGGAGGACCAGGACATTAAATATGTTTAG

Function

NR:

description
transient receptor potential cation channel subfamily V member 6-like

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04974 TRPV5; transient receptor potential cation channel subfamily V member 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU100720 False 1166 lncRNA 0.44 6 23568196 23571243
TU100722 False 818 lncRNA 0.41 3 23568196 23569856
XM_039805778.1 True 4103 mRNA 0.45 16 23560848 23568248
XM_039805779.1 False 3592 mRNA 0.47 17 23560848 23567915

Neighbor

gene id symbol gene type direction distance location
ephb6 ephb6,LOC102800023,LOC104960407 coding upstream 4365 23512555 ~ 23556483 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding upstream 52183 23498789 ~ 23508665 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding upstream 123804 23433649 ~ 23437044 (+)
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding upstream 134203 23420347 ~ 23426645 (+)
foxj2 NA coding upstream 159138 23395934 ~ 23401710 (+)
m6pr NA coding downstream 22618 23593861 ~ 23600002 (+)
phc1 phc1 coding downstream 29859 23601102 ~ 23608496 (+)
clcn1b clcn1,LOC102795222 coding downstream 81325 23652568 ~ 23684905 (+)
zyx zyx,LOC102794270 coding downstream 148618 23719861 ~ 23736431 (+)
kel NA coding downstream 165735 23736978 ~ 23742258 (+)
G75301 NA non-coding upstream 66371 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 119622 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 206673 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 210081 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 218171 23339846 ~ 23342677 (+)
LOC120561968 NA non-coding downstream 60173 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 311934 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 372250 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 401084 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 456640 24027883 ~ 24031339 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 66814 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 477701 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 649328 22900089 ~ 22911520 (+)
myh14 NA other upstream 740795 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 855432 22689070 ~ 22705416 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 70312 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 196990 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 302666 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 455672 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 485194 24056437 ~ 24073698 (+)

Expression


Co-expression Network