LOC120563204


Basic Information

Item Value
gene id LOC120563204
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23768233 ~ 23813408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100857
GATGAGACCAAGGCGAATACGAGCTTACTGACTGAGAGTTGGGTTCTTCTTTGCCTTGACTGGCAGGTAATCTTGGCAGTGCAGAGGAGCATTCCTGCTCTGCTGTAAGGGCCTGCCTACAGTGACTTGGGTCAACCCAAATTATTCCTCTACAGTCACAGCGGAGTAATCACAGGGATGAAacagacagtgtgtgtgtgtgtgtgtgtggttggttgGCTAGGTGTCTAAATGCGTGCACATGTGTTTTTGAGTTTAAACACACGTGTGCAATTGCCAGGAATCTGCACCTGACCTAGTTTAGCAGACAGCACCACATCAACAGGAGACCACTTACAGTAAAACACCACTTGAGACTGAAAAAGGTCCTGACTAATATTGTagcacatgatgaataagttaATAGGGACACTTACAATGCTATCAGACAAAGCTAGAGCTCGCCAGAGGAGATgatgcatttaaaatgtacaatgTTTTTGTGCACTTTGCTGATATaggcttttgttttgttaatgtcCGCTGCTTGCATAATGTCACCTGTAATTTCCAGT
>XR_005639922.1
GCCCAGTGATGAGACCAAGGCGAATACGAGCTTACTGACTGAGAGTTGGGTTCTTCTTTGCCTTGACTGGCAGGTAATCTTGGCAGTGCAGAGGAGCATTCCTGCTCTGCTGTAAGGGCCTGCCTACAGTGACTTGGGTCAACCCAAATTATTCCTCTACAGTCACAGCGGAGTAATCACAGGGATGAAacagacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttggttggttggttggttggttgtgtACATGTGTAAGAGGCAAGGAGGTCACCCAGCTCTCTTCAGTGTTCAGTCAGCGCTGAGTTGCTTCTTTGGTAATCTGAGGGCA

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100857 True 554 lncRNA 0.44 2 23768240 23813408
XR_005639922.1 False 345 snoRNA 0.50 1 23768233 23768577

Neighbor

gene id symbol gene type direction distance location
LOC120563206 NA coding upstream 766 23767185 ~ 23767467 (+)
LOC120563205 NA coding upstream 3588 23764315 ~ 23764645 (+)
ing4 ing4,LOC106605735 coding upstream 5415 23757600 ~ 23762818 (+)
nop2 nop2,LOC102793100 coding upstream 11214 23749945 ~ 23757019 (+)
LOC120561911 NA coding upstream 21675 23742367 ~ 23746558 (+)
si:dkey-260g12.1 NA coding downstream 9916 23823324 ~ 23829685 (+)
tnfrsf1a NA coding downstream 23373 23836781 ~ 23843959 (+)
plekhg6 NA coding downstream 30669 23844077 ~ 23858278 (+)
mrpl51 mrpl51,LOC102789637 coding downstream 56229 23869637 ~ 23871714 (+)
LOC120562185 NA coding downstream 108362 23921770 ~ 23937821 (+)
LOC120561968 NA non-coding upstream 134399 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 273756 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 327007 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 414058 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 417466 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 69769 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 130085 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 158919 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 214475 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 235517 24048925 ~ 24052956 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 116737 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 196990 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 274199 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 685086 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 856713 22900089 ~ 22911520 (+)
LOC120563047 vamp1,LOC104928996 other downstream 60501 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 213507 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 243029 24056437 ~ 24073698 (+)
G75644 NA other downstream 621731 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 707327 24520735 ~ 24534276 (+)

Expression


Co-expression Network