LOC120563047 (vamp1,LOC104928996)


Basic Information

Item Value
gene id LOC120563047
gene name vamp1,LOC104928996
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23873909 ~ 23879415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100879
TGTCGTTACGAGTCCAAGTGGAGAAGGCAGGAGGAGAGACGCATTATTGCAGTAGCTTACAGTACCACAGCACTTCACACGGGCGAAACTACCGCACTTCCCACAAGACGCACCTCTGTCTGCGCagggagaaagcgagagagaggTGGGGGTGACAGAATCAAAGACGGACAACTGATTTCTCATGACTGGACTTTTTATCCCATAATTTTGAAATTGCACGCATTTGCAAGTAGCTTAGAAAAGGCAACTCAACAACCAGCCAATCAGTGCTGCGCTGTAGCATCCAGGAGCTCTATAAGGACTCAGCATCGCCCGGAGGAGCTGCATGCAGCCCTGCAGGAATATGAGCATCCGTGGATTTCTCTTGAATGGATTACTAATTTAGAAGTACTTTTCTCTTCTATCGCATCTCCTTCACTTCCTGCTCTCCAGTCCGGTCACACAGTGAATTATCGCCCGGCCCGTTTACGTGTGTCGGTATATTGCGGTACTTTGCTGACGACTTGCAATATAAATGCATCGCTAGAAGATCGGCTCCACTGCGCCAAGACCCTCTGCCTCTGTTTACTGTTAGCGCGGCACTTCAGTAACTCTGCTTATTGAAAATTTGGACTTTCGTTTGGACCAGTGACTAGAAATTCTCGTCtcgttttttctgttttcttgcagttttttttctcgCGTTGTACTTCAGACCCTCCCTCTCCACCTCACAGCCCTCACCCCCTCCCCCGCTGCCCGTGAGTCAGTTCAAACAGCTGCATAGAAGATGTCTGCCCCAGATGCCGCTGCTCCAGGTGGAGCCCCGGGTGCTCCAGGAGCCCCTGGTGCAGATGGAGCCCCAGGTGGCGCACCTCCTGGCCCACCCAACACTTCCAGCAACCGCAGGCTACAGCAGACACAGGCCCAAGTCGAGGAGGTGGTGGATATCATGCGAGTGAATGTGGACAAGGTTTTGGAAAGGGACCAGAAGCTTTCAGAGCTGGATGACAGAGCGGACGCTCTCCAAGCCGGAGCCTCCCAGTTTGAAAGCTGTGCAGCTAAGCTAAAGAACAAGTACTGGTGGAAGAACTGCAAGATGATGATCATGATGGGTATCATCGGAGTCATTGTGGTTGGAATAATATTCTTGTACTTCTTCTACTGAGCTCAGCCCATCAATACAGATGGATATGGACTTGAGAATGAtatgaaagggaagagaaaaaaagatacCCAAGCGCCACTCCTCCCCTTTTATccatcctctccttcctctctacACAGTCTTCCATCAAACCATCTTGCACTTAAACGTGACAGTAGTATGTATAGGTGTGTCTGCTCTCTTtgtccccctctccctcccttcttgtTGCTTTCTTCCACTGTTTTAagtctcactcactctctcctgTCTGCACCTCATGTATTATTGAAGGACGCAGCAGGCGGagtgaaagaggaagaaaggaagggaaggagggagagagaaaattcTTGTGACACGGAAACACACGGGGCTAAGTCCTCTGAACGATACCATGGGGGGAGATGTACAATGTACAGAATGTGTGCAGGGAGATTGATCAAGAGTTTGCAGTCCTTTCTACCACAGATATACGCCAAAGCTTGTTGATTTTACCTTTTTTGAGAATCCTACATTTGTAATTGATACTGACATGCCTAACTAACACAATTCTTCTCTCACAACTGCTACCATCATTGCTACTTACTAATACAAGGTCATGTTAGATTAAAATTAGGAgcatttttgttgtgtgtgtgtattggtgaTCCAAAGCATTGTAGCCAGTAGCTTTTTCTGAGTTTAGCTGATAGGCTTTTATTATTGATAACTCTTTTGTTTCATTCTTGCCTAACTTTCTGCAACATTCAGTAATGAcaatgagagaaaaagagaaagagactgtGTGCGAGTATAAGGAAAGGAAGAAGAGAGTCACGGAAAAGTAGTAAGCATTCTTTCCTGGTATTAATAAGACCAACTTCCTAAATGCTCATTTTGGACTGATAAGCAATTATTGATAAAGTAGTCGTATAACTATGCTTCATTTTACCTTGGCTTTTGTACAACAGGTGGGGGCAAAATAGTAGTGTTATGCTTAGTGGCATAGGGATATGCacagcaaaacaaacaacaaataacagACAATCTACACGTGAACTGACCAGAGGAAGGTCTCTTAACTCTGACTTGGACAGAGTCACAGCCATAGACAGATGAATGTGGAACATcacatttattgtaaaataaaacttgttttggaaGTTGTGCAGACAAAGTGTTTGTTTGATTGTTGTTTAAGTTGGCCTGATCttcaaaaagcaggaaaatgggAGAAAGGACATGATTTAGAAACCCAGAGCCAACTGGCCCTCCCATTCCCATCCCCTTCAGTCACATTAAAACAGACTCCCCTGTCACCTGCAGTATGGTAATGGCCAAAATGAGGTGTTTGTTTTTAACTTGCATGGCAAACCGTGTCCATAGTTTTGCCTATTTGTGTGATCTGTGTATCTGCCATTTCTGAATCTAACTGCcgattgtacattttatttggtTAGTGGTTTAAACGACTTGTGTATAATGTCTTTCTGTTCTGATAATTACTGCTTATGCAATGCAATGAAATGATGCTCAAGAGTTTGCCAAATGGTGTTCATTTCAATTGCTTTTGAGATAAAACATTCAGAGATGGCAAACAACTGCTACTATAATGAACTGTTATAAACATGTAGTAGATATAACAATAGTACACATAGGTCAGATTATGATCCTGAAAATGTGTTTACAAattctttcagttttttttcggGGGGTTGTTCGAtataaaaaaaagcttattttCCTTTCTTCGGACAGATTTTGAGGGTTGATAAAATTGAGATGCATACATGTAGCAGTTAGTTATAATTATCTGATGATATTGTGCAGCAATATTATTAGGTAATTATCACCATATAAGATATGAGAACATGTTTTGTGATTTACAACTTGGAAATGCAGTAAACTAATGCAAATGGATTTGCGAAAACAAATGCATGCTTACCACTTTTGCTGATGCCAATAAAGAAACCATCAAAAGAA
>XM_039807053.1
acCGCACTGTCGTTACGAGTCCAAGTGGAGAAGGCAGGAGGAGAGACGCATTATTGCAGTAGCTTACAGTACCACAGCACTTCACACGGGCGAAACTACCGCACTTCCCACAAGACGCACCTCTGTCTGCGCagggagaaagcgagagagaggTGGGGGTGACAGAATCAAAGACGGACAACTGATTTCTCATGACTGGACTTTTTATCCCATAATTTTGAAATTGCACGCATTTGCAAGTAGCTTAGAAAAGGCAACTCAACAACCAGCCAATCAGTGCTGCGCTGTAGCATCCAGGAGCTCTATAAGGACTCAGCATCGCCCGGAGGAGCTGCATGCAGCCCTGCAGGAATATGAGCATCCGTGGATTTCTCTTGAATGGATTACTAATTTAGAAGTACTTTTCTCTTCTATCGCATCTCCTTCACTTCCTGCTCTCCAGTCCGGTCACACAGTGAATTATCGCCCGGCCCGTTTACGTGTGTCGGTATATTGCGGTACTTTGCTGACGACTTGCAATATAAATGCATCGCTAGAAGATCGGCTCCACTGCGCCAAGACCCTCTGCCTCTGTTTACTGTTAGCGCGGCACTTCAGTAACTCTGCTTATTGAAAATTTGGACTTTCGTTTGGACCAGTGACTAGAAATTCTCGTCtcgttttttctgttttcttgcagttttttttctcgCGTTGTACTTCAGACCCTCCCTCTCCACCTCACAGCCCTCACCCCCTCCCCCGCTGCCCGTGAGTCAGTTCAAACAGCTGCATAGAAGATGTCTGCCCCAGATGCCGCTGCTCCAGGTGGAGCCCCGGGTGCTCCAGGAGCCCCTGGTGCAGATGGAGCCCCAGGTGGCGCACCTCCTGGCCCACCCAACACTTCCAGCAACCGCAGGCTACAGCAGACACAGGCCCAAGTCGAGGAGGTGGTGGATATCATGCGAGTGAATGTGGACAAGGTTTTGGAAAGGGACCAGAAGCTTTCAGAGCTGGATGACAGAGCGGACGCTCTCCAAGCCGGAGCCTCCCAGTTTGAAAGCTGTGCAGCTAAGCTAAAGAACAAGTACTGGTGGAAGAACTGCAAGATGATGATCATGATGGGTATCATCGGAGTCATTGTGGTTGGAATAATATTCTTGTACTTCTTCTACTGAGCTCAGCCCATCAATACAGATGGATATGGACTTGAGAATGAtatgaaagggaagagaaaaaaagatacCCAAGCGCCACTCCTCCCCTTTTATccatcctctccttcctctctacACAGTCTTCCATCAAACCATCTTGCACTTAAACGTGACAGTAGTATGTATAGGTGTGTCTGCTCTCTTtgtccccctctccctcccttcttgtTGCTTTCTTCCACTGTTTTAagtctcactcactctctcctgTCTGCACCTCATGTATTATTGAAGGACGCAGCAGGCGGagtgaaagaggaagaaaggaagggaaggagggagagagaaaattcTTGTGACACGGAAACACACGGGGCTAAGTCCTCTGAACGATACCATGGGGGGAGATGTACAATGTACAGAATGTGTGCAGGGAGATTGATCAAGAGTTTGCAGTCCTTTCTACCACAGATATACGCCAAAGCTTGTTGATTTTACCTTTTTTGAGAATCCTACATTTGTAATTGATACTGACATGCCTAACTAACACAATTCTTCTCTCACAACTGCTACCATCATTGCTACTTACTAATACAAGGTCATGTTAGATTAAAATTAGGAgcatttttgttgtgtgtgtgtattggtgaTCCAAAGCATTGTAGCCAGTAGCTTTTTCTGAGTTTAGCTGATAGGCTTTTATTATTGATAACTCTTTTGTTTCATTCTTGCCTAACTTTCTGCAACATTCAGTAATGAcaatgagagaaaaagagaaagagactgtGTGCGAGTATAAGGAAAGGAAGAAGAGAGTCACGGAAAAGTAGTAAGCATTCTTTCCTGGTATTAATAAGACCAACTTCCTAAATGCTCATTTTGGACTGATAAGCAATTATTGATAAAGTAGTCGTATAACTATGCTTCATTTTACCTTGGCTTTTGTACAACAGGTGGGGGCAAAATAGTAGTGTTATGCTTAGTGGCATAGGGATATGCacagcaaaacaaacaacaaataacagACAATCTACACGTGAACTGACCAGAGGAAGGTCTCTTAACTCTGACTTGGACAGAGTCACAGCCATAGACAGATGAATGTGGAACATcacatttattgtaaaataaaacttgttttggaaGTTGTGCAGACAAAGTGTTTGTTTGATTGTTGTTTAAGTTGGCCTGATCttcaaaaagcaggaaaatgggAGAAAGGACATGATTTAGAAACCCAGAGCCAACTGGCCCTCCCATTCCCATCCCCTTCAGTCACATTAAAACAGACTCCCCTGTCACCTGCAGTATGGTAATGGCCAAAATGAGGTGTTTGTTTTTAACTTGCATGGCAAACCGTGTCCATAGTTTTGCCTATTTGTGTGATCTGTGTATCTGCCATTTCTGAATCTAACTGCcgattgtacattttatttggtTAGTGGTTTAAACGACTTGTGTATAATGTCTTTCTGTTCTGATAATTACTGCTTATGCAATGCAATGAAATGATGCTCAAGAGTTTGCCAAATGGTGTTCATTTCAATTGCTTTTGAGATAAAACATTCAGAGATGGCAAACAACTGCTACTATAATGAACTGTTATAAACATGTAGTAGATATAACAATAGTACACATAGGTCAGATTATGATCCTGAAAATGTGTTTACAAattctttcagttttttttcggGGGGTTGTTCGAtataaaaaaaagcttattttCCTTTCTTCGGACAGATTTTGAGGGTTGATAAAATTGAGATGCATACATGTAGCAGTTAGTTATAATTATCTGATGATATTGTGCAGCAATATTATTAGGTAATTATCACCATATAAGATATGAGAACATGTTTTGTGATTTACAACTTGGAAATGCAGTAAACTAATGCAAATGGATTTGCGAAAACAAATGCATGCTTACCACTTTTGCTGATGCCAATAAAGAAACCATCAAAAGAA

Function

symbol description
vamp1 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Is expressed in nervous system and neural tube. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome and spastic ataxia 1. Orthologous to human VAMP1 (vesicle associated membrane protein 1).

NR:

description
vesicle-associated membrane protein 2

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13504 VAMP2; vesicle-associated membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU100879 False 3094 TUCP 0.43 5 23873916 23879415
XM_039807053.1 True 3101 mRNA 0.43 5 23873909 23879415

Neighbor

gene id symbol gene type direction distance location
mrpl51 mrpl51,LOC102789637 coding upstream 2195 23869637 ~ 23871714 (+)
plekhg6 NA coding upstream 15631 23844077 ~ 23858278 (+)
tnfrsf1a NA coding upstream 29950 23836781 ~ 23843959 (+)
si:dkey-260g12.1 NA coding upstream 44224 23823324 ~ 23829685 (+)
iffo1b iffo1,LOC102791264 coding upstream 51566 23808580 ~ 23822343 (+)
LOC120562185 NA coding downstream 42355 23921770 ~ 23937821 (+)
wnt4b LOC104932544,LOC103356104,LOC101479331 coding downstream 119020 23998435 ~ 24002544 (+)
mlf2 mlf2 coding downstream 131468 24010883 ~ 24019095 (+)
LOC120562699 eno2 coding downstream 140480 24019895 ~ 24025854 (+)
LOC120563208 NA coding downstream 174857 24054272 ~ 24054328 (+)
LOC120561968 NA non-coding upstream 240075 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 379432 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 432683 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 519734 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 523142 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 3762 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 64078 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 92912 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 148468 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 169510 24048925 ~ 24052956 (+)
LOC120563204 NA other upstream 60501 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 222413 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 302666 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 379875 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 790762 23070587 ~ 23083147 (+)
atn1 atn1 other downstream 147500 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 177022 24056437 ~ 24073698 (+)
G75644 NA other downstream 555724 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 641320 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 926874 24806289 ~ 24885373 (+)

Expression


Co-expression Network