G75483 (ptpn6)


Basic Information

Item Value
gene id G75483
gene name ptpn6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23943493 ~ 23948403 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU100973
TTCACACATGTTCTGACTTTATTCTTAACAAACGCTTCAACCAAGAATTCATGTGCCACATCACATGTCAACCGGTTATCTTGTCTCTAATTTcaaacattcattttattttgtctccaCTAAAATACAAATTCTTTAAGAAAAGACTGCCTGCATAAATATAACAACATGACATACTTTGATAAAACTTTCTTCTATCTTTTCCTCACGGAGCCGCTTTTCTTGTCTGAGTTTGGCTTCTTCacatctttctttccttttgacAGATTCTCGTAAACATCCTCCTTGTTTTTTGAGGCCTTCCTGCTCGCTGGTTGGTGTTTAAGTTTTAGATTTCCAtactctgtctctgtttcCATGGAGGCACTGTCTTTGGCCTTGGTGGTCTGTATGTactcagacacagacaggtAGATGAACTTGTACTGAGCCTCTGTCTGCACCATGCCAGAGCGCTGCTCACGCACCATCTGGATGTATTTCGGGATGTCAAGATCACAGTCCAGACCTAAAGAGTGAGATATGAAAGAATTGGATGGAAGTggtgtaaaagaaaaaagaaaaaaaaaagaaaggaaaacaaaCCGTGTATTTTGaatggttttgtttttactcCAAACATATCTCAATAACGGATttctttaaagatttttttttacctaaagTGTCAATGGTCTCGATGATCATGTCTATCACCACAATCGTGCCCGTTCGACCAATTCCAGCAGCAGTGGATGATCATGGGTCCAGCGTCAGGATACTCAGCCTGTTTATTGTTCACTTGATTGAGGAAGCTGAGGACAGCACCTGGCTCCTGAGGGACGCCGTGGTCAGGCCAGCTCAAGTACTGGTAGTGCCAGATGGTTCGAGATAGTTTTGGctgggaaaaagaaaataattgcaGGATTAGAATAATAAGCTTATGGTGAAAGCCTTCCGTCAGCAAAGCACATACACATAGGCAATTGAGTGCAGTGAGGTCACAGTTTGATGTTTGGAGGTTACCTTGTCCACAGGAGCGATCTCCAAAACTCTGATTTTGTAATCAGCAGCTTCCCTCTCTGAATTAAATGTCACCACGTACGGACCCACCTCCTTGGAAGTCTGAGGGTCGGGCCAGTATGGCACACATTTATTCTGCACAGACATAAATGGTATTTTGCATATTTTTTATGTTGGCTTGACCTCTAAATTGCAACCTATTGCAtgtctttcatatttattttactttgtgtattttattatgtttaccAAGCTCACCAAGGCCAAATCCTTGGCATAATAATAACCAGATATTGTGCCCTTTCCTTTGGCATTTTGAGAGTATCATACTTTCAGTATTTTCCAAAAAAAGAACACTTAAAGATCAATTCTGCTTTCATGAGTGCTGTTTTGATACTGACCCGCCCTTTCTCGACCTCTCTTGTTGTCATGACGATCACCCTCGTGTTCTCCTGCCATACCATCTGCCAGAAATCGTTGACAGTTGTTGCTAGGCACCCCTGGGTTGCGATGTAAACTTTTTGCTCTCCGGACTCCCACAGGGTGTTCTAGAAACACACAGTGAACTAATGAACGCtgctaaataaacaaacacacgtttgtgtttttgtcattttgtgttACTATGAGGCCAGAAACGTTGGAGACTTACTCTCACGTAGTTGGCGTTGATGTAATCTGAACCCACAGTGTCAGGATCACTGTCCTGCAGGATGACCCTGGTGTCATTGACTTGTGAGAAGAAGCGGATGGAGTGAAGAAACAGAAGGA

Function

symbol description
ptpn6 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within innate immune response. Predicted to be located in cytoplasm. Is expressed in blood island; gill; immune system; and liver. Orthologous to human PTPN6 (protein tyrosine phosphatase non-receptor type 6).

NR:

description
tyrosine-protein phosphatase non-receptor type 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100973 True 1773 lncRNA 0.42 4 23943493 23948403

Neighbor

gene id symbol gene type direction distance location
LOC120562185 NA coding upstream 5672 23921770 ~ 23937821 (+)
mrpl51 mrpl51,LOC102789637 coding upstream 71779 23869637 ~ 23871714 (+)
plekhg6 NA coding upstream 85215 23844077 ~ 23858278 (+)
tnfrsf1a NA coding upstream 99534 23836781 ~ 23843959 (+)
si:dkey-260g12.1 NA coding upstream 113808 23823324 ~ 23829685 (+)
wnt4b LOC104932544,LOC103356104,LOC101479331 coding downstream 50032 23998435 ~ 24002544 (+)
mlf2 mlf2 coding downstream 62480 24010883 ~ 24019095 (+)
LOC120562699 eno2 coding downstream 71492 24019895 ~ 24025854 (+)
LOC120563208 NA coding downstream 105869 24054272 ~ 24054328 (+)
clstn3 clstn3,LOC102784285 coding downstream 125680 24074083 ~ 24098119 (+)
G75427 NA non-coding upstream 58862 23883177 ~ 23884631 (+)
LOC120561968 NA non-coding upstream 309659 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 449016 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 502267 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 589318 23351145 ~ 23354175 (+)
G75493 NA non-coding downstream 23924 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 79480 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 100522 24048925 ~ 24052956 (+)
G75582 gnb3,LOC103375278 non-coding downstream 170914 24119317 ~ 24122009 (+)
G75583 NA non-coding downstream 173624 24122027 ~ 24125081 (+)
LOC120563047 vamp1,LOC104928996 other upstream 64078 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 130085 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 291997 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 372250 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 449459 23491125 ~ 23494034 (+)
atn1 atn1 other downstream 78512 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 108034 24056437 ~ 24073698 (+)
G75644 NA other downstream 486736 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 572332 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 857886 24806289 ~ 24885373 (+)

Expression


Co-expression Network